PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 6612
Organism
Ostreococcus lucimarinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family MYB_related
Protein Properties Length: 239aa    MW: 27060.5 Da    PI: 9.799
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
6612genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding408.8e-131357147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT+ E++++++a +++  + Wk+I +++g  +   q++s+ qk+
             6612 13 RVSWTPKEHQRFLRALELYSRD-WKRIEEYVG-SKDVVQIRSHAQKH 57
                     679****************977.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.48E-15861IPR009057Homeodomain-like
PROSITE profilePS5129414.269862IPR017930Myb domain
SMARTSM007172.2E-91260IPR001005SANT/Myb domain
TIGRFAMsTIGR015574.6E-141260IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.603.1E-61357IPR009057Homeodomain-like
PfamPF002491.1E-101357IPR001005SANT/Myb domain
CDDcd001675.88E-81558No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
KKPRKPYTQT RARVSWTPKE HQRFLRALEL YSRDWKRIEE YVGSKDVVQI RSHAQKHFLK  60
LMKSGQGDQM PPPRHKKSNH ADGERAVNYV PGMSQAMRLR LQVEPDGSLP VAPKRAPGVP  120
PPLQNSTNTP DFATVYGFLA DLFKVNEART EPEHALRLSH TTPLENMTAI DRETALLLIR  180
NLRNNMCSKQ MWQQQSDLLE DGCSTFLDAQ DAERLRPKTF GKVSDASPDD NSSGDGSGD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0005840.0CP000584.1 Ostreococcus lucimarinus CCE9901 chromosome 4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001417610.11e-180predicted protein, partial
TrEMBLA4RWN51e-179A4RWN5_OSTLU; Uncharacterized protein (Fragment)
STRINGABO959031e-180(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP4541427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01520.12e-34MYB_related family protein