PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

66294

Common Name

SELMODRAFT_66294

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

Trihelix

Protein Properties

Length: 216aa MW: 25118.5 Da PI: 10.3671

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
66294	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	97.3	1.4e-30	3	87	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laLi++r+em+ ++r++ lk+plWeevs+++ e gf+rs+k+Ckek+en++k+ykk+k g+ +r+ + + +++f qlea 66294 3 RWPRQETLALIRIRTEMDANFRDSGLKAPLWEEVSRRLGELGFQRSAKKCKEKFENVHKYYKKTKGGKAGRQ--DGKCYRFFAQLEA 87 8******************************************************************985..5556****985 PP
2	trihelix	107.2	1.1e-33	124	208	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+kqev+aLi++r+ me+++++ +k+plWee+s m + g++rs+k+Ckekwen+nk+++k+k+++k+r se+s+tcpyf+ql+ 66294 124 RWPKQEVHALIRLRSGMESKFQEPGAKGPLWEEISTSMGHMGYSRSSKRCKEKWENINKYFRKTKDSSKRR-SENSKTCPYFQQLD 208 8******************************************************************98.88899*****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.201	1	60	IPR017877	Myb-like domain
SMART	SM00717	1.1	1	62	IPR001005	SANT/Myb domain
CDD	cd12203	2.45E-23	2	59	No hit	No description
Pfam	PF13837	9.4E-21	2	88	No hit	No description
PROSITE profile	PS50090	7.294	117	181	IPR017877	Myb-like domain
SMART	SM00717	0.0029	121	183	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.4E-5	122	180	IPR009057	Homeodomain-like
Pfam	PF13837	1.5E-21	123	209	No hit	No description
CDD	cd12203	5.73E-29	123	188	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
GNRWPRQETL ALIRIRTEMD ANFRDSGLKA PLWEEVSRRL GELGFQRSAK KCKEKFENVH 60 KYYKKTKGGK AGRQDGKCYR FFAQLEALYG SNSSGAGAIT PVGKQQSDLQ DEDFKEHFDP 120 NSKRWPKQEV HALIRLRSGM ESKFQEPGAK GPLWEEISTS MGHMGYSRSS KRCKEKWENI 180 NKYFRKTKDS SKRRSENSKT CPYFQQLDML YRTGVL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor that binds specific DNA sequence such as GT3 box 5'-GGTAAA-3' in the SDD1 promoter. Negative regulator of water use efficiency (WUE) via the promotion of stomatal density and distribution by the transcription repression of SDD1. Regulates the expression of several cell cycle genes and endoreduplication, especially in trichomes where it prevents ploidy-dependent plant cell growth. {ECO:0000269\|PubMed:19717615, ECO:0000269\|PubMed:21169508}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by water stress. {ECO:0000269\|PubMed:21169508}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024522974.1	3e-80	trihelix transcription factor GTL1, partial
Refseq	XP_024532616.1	6e-80	trihelix transcription factor GT-2 isoform X2
Swissprot	Q9C882	9e-41	GTL1_ARATH; Trihelix transcription factor GTL1
TrEMBL	D8RM02	1e-160	D8RM02_SELML; Uncharacterized protein (Fragment)
STRING	EFJ27020	1e-161	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP663	15	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	1e-40	Trihelix family protein

Link Out ? help Back to Top
Phytozome	66294
Entrez Gene	9640475

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031] Caro E,Desvoyes B,Gutierrez C GTL1 keeps cell growth and nuclear ploidy under control. EMBO J., 2012. 31(24): p. 4483-5 [PMID:23188085] Zheng X, et al. The Wheat GT Factor TaGT2L1D Negatively Regulates Drought Tolerance and Plant Development. Sci Rep, 2016. 6: p. 27042 [PMID:27245096] Shibata M, et al. GTL1 and DF1 regulate root hair growth through transcriptional repression of ROOT HAIR DEFECTIVE 6-LIKE 4 in Arabidopsis. Development, 2018. [PMID:29439132]