PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

67638

Common Name

SELMODRAFT_67638

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

NAC

Protein Properties

Length: 171aa MW: 19600.2 Da PI: 9.8308

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
67638	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	105.5	6.8e-33	10	148	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.....leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.....sgyWkatgkdkev 92 lp+G++F+P+d+e++ ++L++k+ + ++++ +++ +i++ +P++Lp vk++ ++ +fF++ +++y++g+rk+r+++ + +W++tgk+++v 67638 10 LPAGVKFDPNDKEIL-DHLAAKIGRGGkphalIDEFIPtLEDDeGICSKHPEKLP-GVKSDGSSSHFFHRPSNAYTKGTRKRRKVQtddddETRWHKTGKTRPV 111 799*********9.89999998766565443332222333336******.77888999***************75545666899****** PP NAM 93 lskkgelvglkktLvfykg..rapkgektdWvmheyrl 128 ++ +ge++g kk++v+y++ +++k++kt+Wv+h+y++ 67638 112 ME-NGEVIGWKKIMVLYTNfkKKSKPKKTNWVIHQYHV 148 .999*********6433888899*******97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.27E-35	4	167	IPR003441	NAC domain
PROSITE profile	PS51005	30.615	10	167	IPR003441	NAC domain
Pfam	PF02365	3.4E-14	11	148	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
SQAPQDWTGL PAGVKFDPND KEILDHLAAK IGRGGKPHAL IDEFIPTLED DEGICSKHPE 60 KLPGVKSDGS SSHFFHRPSN AYTKGTRKRR KVQTDDDDET RWHKTGKTRP VMENGEVIGW 120 KKIMVLYTNF KKKSKPKKTN WVIHQYHVGI HEDEREGELV MSKVFFQTQP R

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00460	DAP	Transfer from AT4G29230	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024536647.1	1e-124	NAC domain-containing protein 82 isoform X1
Refseq	XP_024536648.1	1e-124	NAC domain-containing protein 73 isoform X3
Swissprot	Q9M0F8	5e-82	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	D8RBR5	1e-124	D8RBR5_SELML; Uncharacterized protein (Fragment)
STRING	EFJ30836	1e-125	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP525	15	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	2e-80	NAC domain containing protein 75

Link Out ? help Back to Top
Phytozome	67638
Entrez Gene	9631469

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]