PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676699764
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family B3
Protein Properties Length: 148aa    MW: 17052.7 Da    PI: 6.1005
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676699764genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3314.6e-1079137154
                EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrk 54 
                f kvl+ sd++k+g l+l k++a e+     +++++ s++++ +d++g +W++k+++r+
  676699764  79 FTKVLSASDASKNGSLSLIKRHAIEClpqldMSQPNPSQDIVAKDLHGHEWKFKHRFRG 137
                89*****************************77788889****************8764 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.4E-1672137IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.2E-1872137IPR015300DNA-binding pseudobarrel domain
CDDcd100171.45E-1077137No hitNo description
PfamPF023621.8E-779136IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
EVMDSLMIFL YDQLWKLCAG SLFESPKIGD MIYYFPQGDI EQVETNTNKV YAKVSLMPET  60
PEIEILTPTY NNIQNIKYFT KVLSASDASK NGSLSLIKRH AIECLPQLDM SQPNPSQDIV  120
AKDLHGHEWK FKHRFRGIKF LFSYIIGE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A3e-301013719182Auxin response factor 1
4ldw_A3e-301013719182Auxin response factor 1
4ldw_B3e-301013719182Auxin response factor 1
4ldx_A4e-301013719182Auxin response factor 1
4ldx_B4e-301013719182Auxin response factor 1
4ldy_A3e-301013719182Auxin response factor 1
4ldy_B3e-301013719182Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676699764
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013610601.12e-52PREDICTED: LOW QUALITY PROTEIN: putative auxin response factor 21
SwissprotQ9LP075e-42ARFW_ARATH; Putative auxin response factor 23
SwissprotQ9LQE38e-42ARFO_ARATH; Putative auxin response factor 15
TrEMBLA0A078J0H23e-55A0A078J0H2_BRANA; BnaC09g52440D protein
TrEMBLA0A0D3E7U83e-55A0A0D3E7U8_BRAOL; Uncharacterized protein
TrEMBLA0A0D3E7Z66e-54A0A0D3E7Z6_BRAOL; Auxin response factor
STRINGBo9g074620.15e-56(Brassica oleracea)
STRINGBo9g076090.11e-54(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43950.12e-44auxin response factor 23