PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676703688

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

bHLH

Protein Properties

Length: 226aa MW: 25947 Da PI: 6.2494

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676703688	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.1	1.2e-11	151	191	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ +L++l+P+ +K++ +++Le+Av+Y+k Lq 676703688 151 RKRRERINDRLKTLQRLVPNG-----TKVDISTMLEEAVHYVKFLQ 191 9****************97.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.218	141	190	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.57E-14	141	207	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.8E-13	146	203	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.3E-12	147	196	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.40E-12	150	195	No hit	No description
Pfam	PF00010	4.6E-9	151	191	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MDEAFVNGEL ESLLGMFNFD QFSSDDSSFY NEQHHHSNEI DISSCNDFFP FATILERNYP 60 AVPDGSNHET NLYIDSRQEL VKPRKKQKLS SESNLVSEPQ TTWRDVPNIN SFNSSDNEKA 120 ICLETNTSKS LQRKAKPNKG TATDPQSLYA RKRRERINDR LKTLQRLVPN GTKVDISTML 180 EEAVHYVKFL QLQIKLLSSD DLWMYAPIAQ NGLNMGLHNN LLSRFL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676703688

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB023030	5e-41	AB023030.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K24F5.
GenBank	CP002688	5e-41	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024013157.1	1e-126	transcription factor bHLH139
Swissprot	Q3E7L7	1e-122	BH139_ARATH; Transcription factor bHLH139
TrEMBL	V4L342	1e-122	V4L342_EUTSA; Uncharacterized protein
STRING	XP_006403282.1	1e-122	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4132	22	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43175.1	1e-104	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]