PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676705068

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

Protein Properties

Length: 326aa MW: 36194.7 Da PI: 10.1183

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676705068	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	50.4	3.9e-16	158	248	1	97
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 f+k +++s+v+ +l lp +f+++ +k ++ +tl de+g+++e + k+ + l++GW +F+ a++L gD +vF+l++r+ +l ++v+ 676705068 158 FVKSMLQSHVSGCFWLGLPVHFCRSQL-QK-QDGVITLIDEEGEEFETVY--LAKRTG--LSGGWMGFAVAHNLAYGDALVFELVRRTVLKLELQVI 248 89*******************8884.43.4448***********..555544..***********************998888887765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	3.34E-19	153	242	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	2.8E-16	155	243	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.08E-20	156	239	No hit	No description
Pfam	PF02362	1.2E-13	158	247	IPR003340	B3 DNA binding domain
SMART	SM01019	4.8E-20	158	251	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.785	158	255	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MVVAKPCPYE DFRLRRVEEN KKRMEALNLP KLCQNLHSTS VKTSPMWQMK KSTLRSSEKQ 60 LVIVRRSSRI SNTCSSPGYK EASCCSTSID TQKVKFHKDL IFLLFCKYKT KTIVLLPFRV 120 SKRRDLSNRV YVSEEVKEEA ISKAEKLQAG LGNGFPSFVK SMLQSHVSGC FWLGLPVHFC 180 RSQLQKQDGV ITLIDEEGEE FETVYLAKRT GLSGGWMGFA VAHNLAYGDA LVFELVRRTV 240 LKLELQVIFH VTPSSSVSPT QPSFLVQSSI ASSRSSSPCI GNGANEPAAS SVSSSASSAS 300 IPFISSLSET CSRRCTRVGV QRSKSR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676705068

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009123694.2	1e-103	PREDICTED: B3 domain-containing protein At5g42700
Swissprot	Q9FMZ4	5e-88	Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBL	A0A3P6DF05	1e-105	A0A3P6DF05_BRAOL; Uncharacterized protein
STRING	Bra035324.1-P	1e-106	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3744	27	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	4e-89	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]