PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676705534
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 249aa    MW: 29092.2 Da    PI: 8.066
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676705534genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.74.8e-0990139155
                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                r+r h ++Er RR++ ++++  L ++lP +     +K++K +i+ kAv+ I +L+
  676705534  90 RCRRHMMNERTRREKQKQSYLALHSVLPFD-----TKNDKNSIVGKAVDQIEKLE 139
                6788*************************9.....9***************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-1182153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.85E-887143No hitNo description
PROSITE profilePS5088812.31689138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-690139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-793156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-695144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MDNFFLDSVC QEEEDKFWDL IPGDISGYGD DDDDKTPSVL NRSAFRSYVK DMEPRMVTSS  60
STVNVKSRMV NLLRKNWEEK KKAAVPEKER CRRHMMNERT RREKQKQSYL ALHSVLPFDT  120
KNDKNSIVGK AVDQIEKLEG LKKELQRRMN TLEAKSVNNH DEMSGTKIRF SLQEPLSGVD  180
SMVEILQCLK LMGTKVKTVQ ATFSPHEFST TMKIETTQVR EEVEKRVERR LQETEWKLLF  240
LPEASFFKD
Cis-element ? help Back to Top
SourceLink
PlantRegMap676705534
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006403210.11e-132transcription factor bHLH92
SwissprotQ9FIX51e-116BH092_ARATH; Transcription factor bHLH92
TrEMBLV4LXN51e-130V4LXN5_EUTSA; Uncharacterized protein
STRINGXP_006403210.11e-131(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96022537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.11e-102bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]