PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676705838
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family NAC
Protein Properties Length: 300aa    MW: 34232.3 Da    PI: 7.1795
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676705838genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM96.34.7e-3041192127
        NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                p+GfrF Ptdee+v++y ++k  +++  +++ev+++vdi++++Pw+Lp k ++k++++ wyfF ++++++++g+r++r+tksg+Wk+tg + ++++k+g+
  676705838   4 PVGFRFCPTDEEVVKHYVRPKNLESNtSHVDEVMNTVDICSFDPWELPrKsRIKSTDHVWYFFGCKKNQHKRGERQSRKTKSGFWKKTGDTLDIKRKRGN 103
                89*****************99665553788889**************95358888999************************************996664 PP

        NAM  99 lvglkktLvfykgrapkgektdWvmheyr 127
                            g+ +k +k+ Wvmhey 
  676705838 104 ------------GDGSK-SKSGWVMHEYV 119
                ............44444.58999999996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100525.3763159IPR003441NAC domain
SuperFamilySSF1019411.07E-333123IPR003441NAC domain
PfamPF023651.9E-174119IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MVDPVGFRFC PTDEEVVKHY VRPKNLESNT SHVDEVMNTV DICSFDPWEL PRKSRIKSTD  60
HVWYFFGCKK NQHKRGERQS RKTKSGFWKK TGDTLDIKRK RGNGDGSKSK SGWVMHEYVA  120
TFLSPTQDQS LIPHVNNPCG GLSTETEGSS FELQNLRQFS GFFHMEEEAR QEDATLRAIN  180
NLSTDDEWKS FLNNDNGEDE QGMCSIETST CVSFGSSNHR IDQIKNLQES PSSTIELLLV  240
TQEATSEKKM NLCDDAQVSQ TGEGPMGQEM VIKNRRAGFI YRLIQKFTRK TKLYSCVSRA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-16411816138Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap676705838
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009119654.11e-111PREDICTED: NAC domain-containing protein 5-like
SwissprotO819143e-84NAC5_ARATH; NAC domain-containing protein 5
TrEMBLA0A3P6CVK11e-114A0A3P6CVK1_BRACM; Uncharacterized protein
STRINGBra033303.1-P1e-110(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02250.11e-86NAC domain containing protein 5
Publications ? help Back to Top
  1. Jiang J,Zhang Z,Cao J
    Pollen wall development: the associated enzymes and metabolic pathways.
    Plant Biol (Stuttg), 2013. 15(2): p. 249-63
    [PMID:23252839]