PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676706308
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family M-type_MADS
Protein Properties Length: 171aa    MW: 19810.2 Da    PI: 9.7587
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676706308genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.66e-171564150
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
               k+ie +  + +tfskR++gi+KK +E+ +LCd+e+  ++f +tgk y++ 
  676706308 15 KKIEADGDQMITFSKRKAGIFKKMNEIATLCDVEATFLVFNQTGKPYTFV 64
               5788888999**************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006621.236767IPR002100Transcription factor, MADS-box
SMARTSM004323.1E-20766IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-20874IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-15929IPR002100Transcription factor, MADS-box
PfamPF003192.0E-191663IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-152944IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-154465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MSMKQPKGKQ KIQMKKIEAD GDQMITFSKR KAGIFKKMNE IATLCDVEAT FLVFNQTGKP  60
YTFVHQSVEE GFGRLKISLR HEPSVRDDTN TGPLVVAYKW KRIEDLMKSY DDLVEEPEME  120
KEKEKKLKEL KSEKKSDETW VGMKMVVHVR VLQDMGIVAD LVVVKRKLEQ S
Cis-element ? help Back to Top
SourceLink
PlantRegMap676706308
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006408223.13e-48agamous-like MADS-box protein AGL62
TrEMBLV4NSM77e-47V4NSM7_EUTSA; Uncharacterized protein
STRINGXP_006408223.11e-47(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.18e-39AGAMOUS-like 57