PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676706474
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family M-type_MADS
Protein Properties Length: 193aa    MW: 21616.8 Da    PI: 9.4307
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676706474genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.85.8e-182068149
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
               k++e++  r vtfskR++gi+KK +E  +LC++e+a ++fs++gk y++
  676706474 20 KKVEDDGDRMVTFSKRKAGIFKKMNEFATLCNMEAAFLVFSESGKPYTF 68
               57899999****************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006622.6511272IPR002100Transcription factor, MADS-box
SMARTSM004326.1E-241271IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-221383IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-151434IPR002100Transcription factor, MADS-box
PfamPF003192.7E-212168IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-153449IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-154970IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MVPAIMSMKQ TKGNQKIEMK KVEDDGDRMV TFSKRKAGIF KKMNEFATLC NMEAAFLVFS  60
ESGKPYTFGH PSVNEVFGRL KSSLRHEPSV RDDTKTRPLV EADKRQRIED LMKKYDDLVD  120
ELEMEKEKEK KLKESKKGLS VEELKRRHNS FLELHASLSR MAIKWLGNDD GGSSAGLAGH  180
GHCGGPGGSA AEP
Cis-element ? help Back to Top
SourceLink
PlantRegMap676706474
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006408223.16e-65agamous-like MADS-box protein AGL62
TrEMBLV4NSM71e-63V4NSM7_EUTSA; Uncharacterized protein
STRINGXP_006408223.12e-64(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.12e-43AGAMOUS-like 57