PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676706854
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB
Protein Properties Length: 288aa    MW: 33425.9 Da    PI: 6.7028
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676706854genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.52.6e-071449148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+ +++ +G             +R++k+c++rw++yl
        676706854 14 KGPWSPEEDAKLKSYIETYGL------------KRCGKSCRLRWLNYL 49
                     79******************4............5999*********97 PP
2Myb_DNA-binding383.8e-125698246
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     g +++eE+ ++ ++    G++ W+ Ia+ ++ gRt++++k++w++
        676706854 56 GGFSEEEENIICNLYLTIGSR-WSIIAAQLP-GRTDNDIKNYWNT 98
                     569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.64E-221196IPR009057Homeodomain-like
SMARTSM007172.9E-61351IPR001005SANT/Myb domain
PfamPF002496.2E-71449IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-161556IPR009057Homeodomain-like
CDDcd001671.24E-716100No hitNo description
PROSITE profilePS5129420.54650104IPR017930Myb domain
SMARTSM007178.1E-1154102IPR001005SANT/Myb domain
PfamPF002497.2E-115698IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-2357105IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKSYIE TYGLKRCGKS CRLRWLNYLR PNIKHGGFSE  60
EEENIICNLY LTIGSRWSII AAQLPGRTDN DIKNYWNTRL KKKLIIKQRK ELQEACMEQH  120
EMMVMMKRQE QQQQIQTTFM MKQEQAVFTW PLQQLPYHHH DDQVPNLVMN SFCDQEDIKP  180
VIIKNMVKIE DQEPERTNVF DHLSFSQLLL DPNNNHLGSG EGFSMNSILS TNTNSPLLNT  240
SLNHQWFGNF PDEAIDLFSG ATSTSADQRT IRWEDISSLV YSDSKQCC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-24141047108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00089SELEXTransfer from AT3G49690Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676706854
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195971e-133AY519597.1 Arabidopsis thaliana MYB transcription factor (At3g49690) mRNA, complete cds.
GenBankBT0292241e-133BT029224.1 Arabidopsis thaliana At3g49690 mRNA, complete cds.
GenBankY142091e-133Y14209.1 A.thaliana mRNA for AtMYB84 R2R3-MYB transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013603272.10.0PREDICTED: transcription factor RAX3
SwissprotQ9M2Y91e-162RAX3_ARATH; Transcription factor RAX3
TrEMBLA0A397Z5200.0A0A397Z520_BRACM; Uncharacterized protein
STRINGBo8g078940.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29412568
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.11e-130myb domain protein 84
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]
  3. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]