PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676707316

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

GeBP

Protein Properties

Length: 442aa MW: 49760.6 Da PI: 4.5533

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676707316	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	106.9	1.5e-33	41	137	2	98
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 + +r+w+e+De+++L+Gl+d++ kt +p d+d+f+efv++ +++k+sk+ql++Kir+L++Kf ++ ++++g++p f+++ d+++f++s++iWg+ 676707316 41 KTKRIWNEDDELAILKGLVDYRVKTRDEPNFDWDGFFEFVRGLVHVKFSKEQLFSKIRKLRRKFIVNMGRINQGQDPFFTRSTDSQAFGYSNMIWGQ 137 689********************************************************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	9.2E-26	43	136	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence Send to blast
MTTPKRLNGG DGDGGDSYTS LHNHATEQEG EEEPVKKKKK KTKRIWNEDD ELAILKGLVD 60 YRVKTRDEPN FDWDGFFEFV RGLVHVKFSK EQLFSKIRKL RRKFIVNMGR INQGQDPFFT 120 RSTDSQAFGY SNMIWGQDEA ADEVANGTNM EKDEVASGRS MEKDEVANGR NMEEDEVARN 180 MKKAEIANGR NMEEDEIGNG RSVEADEVSK GRSMEKGEVA NMEKDEVANG RNMEKAEIGN 240 GRSVEEDKVA NGRSMEEEEV ANGRSVEKDE VANRRSVEEE EVAHGRSIEN DEVGNGTRLE 300 KDKVANGGLE KTVQIENGED AFREDERVAN EEPVNGNGEK KKRKFDSGSL HGKAADGKES 360 HEEDEDDDDF CVVEEAFETM VSRGLSGYQK ELQLEKLRNL GTGIRKELSN EWKSLCAEEL 420 KLNIKKLRFS LELVEAANDG AV

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence Send to blast

MTTPKRLNGG DGDGGDSYTS LHNHATEQEG EEEPVKKKKK KTKRIWNEDD ELAILKGLVD  60
YRVKTRDEPN FDWDGFFEFV RGLVHVKFSK EQLFSKIRKL RRKFIVNMGR INQGQDPFFT  120
RSTDSQAFGY SNMIWGQDEA ADEVANGTNM EKDEVASGRS MEKDEVANGR NMEEDEVARN  180
MKKAEIANGR NMEEDEIGNG RSVEADEVSK GRSMEKGEVA NMEKDEVANG RNMEKAEIGN  240
GRSVEEDKVA NGRSMEEEEV ANGRSVEKDE VANRRSVEEE EVAHGRSIEN DEVGNGTRLE  300
KDKVANGGLE KTVQIENGED AFREDERVAN EEPVNGNGEK KKRKFDSGSL HGKAADGKES  360
HEEDEDDDDF CVVEEAFETM VSRGLSGYQK ELQLEKLRNL GTGIRKELSN EWKSLCAEEL  420
KLNIKKLRFS LELVEAANDG AV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	35	43	KKKKKKTKR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676707316

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6117	17	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G25650.1	4e-38	DNA-binding storekeeper protein-related transcriptional regulator