PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676707426

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

M-type_MADS

Protein Properties

Length: 426aa MW: 47510.6 Da PI: 4.0817

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676707426	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	29.8	7.8e-10	13	51	1	39
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevavii 39 k+i nks + +tf+kR+ng+ KA+ L+ +a++a++ 676707426 13 KKITNKSSKATTFTKRLNGLYSKASQLCMIRGAQIAILS 51 689*********************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	13.904	5	50	IPR002100	Transcription factor, MADS-box
SMART	SM00432	6.5E-8	5	65	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.7E-13	6	78	IPR002100	Transcription factor, MADS-box
CDD	cd00266	6.70E-19	6	81	No hit	No description
PRINTS	PR00404	1.7E-6	7	27	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	9.5E-10	14	52	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.7E-6	27	42	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence Send to blast
MVKGGTKRKI DIKKITNKSS KATTFTKRLN GLYSKASQLC MIRGAQIAIL STPSSSHSNV 60 PFYSFGHSSV DDVVSAFLSG QSLLPVSEES KEMREDFGIC LARIDLGLGH WWDDERLEKN 120 PGEINDAIES IKSLLNHVKR LRTEEVLLDE TLITDVDDLP ANFGDEILSV SDNKNKALSP 180 SANLDEWSDM DLDQLLKGFN DDIPVNFNAE HDKILSVSDN NKALSPAGNL DEWSDMDLDQ 240 LLKGFDDCLP EKINEKTEQA EHNKIFDDDL PANFNAKHDK ILSVSNNNNA LSSAGNLDEW 300 SDMHLDQLLK GFDDDLPGNF NAEHDEILSV SDNNNAFLPA GNLEEWSDMD LDQLLKGFDD 360 DLPEILDEKT EQEDHQIVAV TENCCNNKKK TLLPAGKFDD EQELLDLDFE SICEGLEDLD 420 CLIGGY

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence Send to blast

MVKGGTKRKI DIKKITNKSS KATTFTKRLN GLYSKASQLC MIRGAQIAIL STPSSSHSNV  60
PFYSFGHSSV DDVVSAFLSG QSLLPVSEES KEMREDFGIC LARIDLGLGH WWDDERLEKN  120
PGEINDAIES IKSLLNHVKR LRTEEVLLDE TLITDVDDLP ANFGDEILSV SDNKNKALSP  180
SANLDEWSDM DLDQLLKGFN DDIPVNFNAE HDKILSVSDN NKALSPAGNL DEWSDMDLDQ  240
LLKGFDDCLP EKINEKTEQA EHNKIFDDDL PANFNAKHDK ILSVSNNNNA LSSAGNLDEW  300
SDMHLDQLLK GFDDDLPGNF NAEHDEILSV SDNNNAFLPA GNLEEWSDMD LDQLLKGFDD  360
DLPEILDEKT EQEDHQIVAV TENCCNNKKK TLLPAGKFDD EQELLDLDFE SICEGLEDLD  420
CLIGGY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676707426

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A3P6FNS5	2e-58	A0A3P6FNS5_BRAOL; Uncharacterized protein
STRING	Bo8g011140.1	2e-58	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM454	17	145

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49420.1	1e-57	M-type_MADS family protein