PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676707934
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family NF-YC
Protein Properties Length: 122aa    MW: 13642.4 Da    PI: 4.7014
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676707934genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC83.72.1e-261611070
      NF-YC 10 iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenk 70
               +e ++dfk h+l lari++i+k++  v misaeaP++++kace+f+++lt rswlha enk
  676707934  1 MEAVEDFKSHHLLLARINQIIKSEHYVCMISAEAPIVFAKACEMFLVDLTTRSWLHAVENK 61
               7899*******************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.4E-20362IPR009072Histone-fold
SuperFamilySSF471132.79E-14562IPR009072Histone-fold
PfamPF008081.0E-71461IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MEAVEDFKSH HLLLARINQI IKSEHYVCMI SAEAPIVFAK ACEMFLVDLT TRSWLHAVEN  60
KSLPRDESVV GNHQGYVAVP HLDSGVQYYY PPVIDERGMS APQQEVWPSC WPVASSGGDG  120
EE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B4e-20161767NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676707934
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006402087.13e-41nuclear transcription factor Y subunit C-6
SwissprotQ9FGP72e-32NFYC6_ARATH; Nuclear transcription factor Y subunit C-6
TrEMBLV4KZY07e-40V4KZY0_EUTSA; Uncharacterized protein
STRINGXP_006402087.11e-40(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47828160
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50480.17e-35nuclear factor Y, subunit C6
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]