PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676708024
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family NF-YC
Protein Properties Length: 130aa    MW: 14771.2 Da    PI: 10.4849
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676708024genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC52.89.1e-1710901897
      NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97
               + e+P++r+kki+k d+d+++i +ea  l++ + elf+  l+ +s l + e+kr+t++   +  av+r + + dfl+d  p
  676708024 10 RPEFPITRVKKIMKLDKDINKINSEALHLVTYSTELFLRFLAEKSSLVTSEKKRKTVNLDHLRIAVKRHQpTSDFLLDSLP 90
               668***************************************************************9976489*****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.5E-1710100IPR009072Histone-fold
PfamPF008081.2E-201275IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.102.9E-201390IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MAEEEETTIR PEFPITRVKK IMKLDKDINK INSEALHLVT YSTELFLRFL AEKSSLVTSE  60
KKRKTVNLDH LRIAVKRHQP TSDFLLDSLP LPSAQPVRVA KTVSEKKPPP VGTRRIDDFF  120
GKGKAKVDSS
Cis-element ? help Back to Top
SourceLink
PlantRegMap676708024
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006403274.22e-79nuclear transcription factor Y subunit gamma
TrEMBLA0A078H1V61e-78A0A078H1V6_BRANA; BnaC07g16980D protein
STRINGXP_006403274.14e-79(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128602530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.12e-63nuclear factor Y, subunit C13