PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676708078
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C3H
Protein Properties Length: 469aa    MW: 49677.2 Da    PI: 8.1666
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676708078genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.34.5e-125276327
               S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
               ++ C +++rtG C yG+rC+F+H++
  676708078 52 EPDCIYYLRTGVCGYGSRCRFNHPR 76
               799********************96 PP
2zf-CCCH38.81.6e-1297122227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                +++ C++f+rtGtCk+G++Ck++H++
  676708078  97 GQPVCQHFMRTGTCKFGASCKYHHPR 122
                5789********************96 PP
3zf-CCCH39.78.2e-13146170226
                -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                +++ C++++rtG+Ck+G++C+F+H+
  676708078 146 GEKDCSYYMRTGQCKFGSTCRFHHP 170
                7889********************9 PP
4zf-CCCH37.83.2e-12297322126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                +++++C++f+rtG Ck+G +C+++H+
  676708078 297 PGQPECQYFMRTGDCKFGTSCRYHHP 322
                5789*********************9 PP
5zf-CCCH34.63.1e-11342368127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                ++t+ C++fa+ G+Ck+G+ CkF H++
  676708078 342 PGTAQCSHFAQHGICKFGPACKFDHSM 368
                689**********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.4E-54976IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.2394977IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-95276IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-65377IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-55576IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-695122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.27795123IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-1097122IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-697122IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-5100122IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-6144171IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.45144172IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-10146170IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-6147171IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4150169IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-6296323IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.77296324IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-9298322IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-6300324IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-4302322IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-5341368IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.258341369IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-8342367IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-6342369IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-4345368IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MERYGRAGEE VSRSDPSLEW TGPGTETGIE GTMWRLGLPG GGGESYPERP NEPDCIYYLR  60
TGVCGYGSRC RFNHPRNRPP VLGGLRTEAG EFPERMGQPV CQHFMRTGTC KFGASCKYHH  120
PRQGGGGDSV TTPVSLNYMG FPLRPGEKDC SYYMRTGQCK FGSTCRFHHP VPPGVQAPSQ  180
QQQQQQLSGG PAVYPSLQSQ SVPSSQQFGV IIARPPLLPG SYVQSPYGYG QMVLPPGMVP  240
YSGWNPYQAS VSAIPSPGTQ PSMGSSSVYG ITPLSPSANA YQSGPSSNKE QSFPQRPGQP  300
ECQYFMRTGD CKFGTSCRYH HPLEAADPKG VTLSHIGLPL RPGTAQCSHF AQHGICKFGP  360
ACKFDHSMSS SSLSYSPSAS SLTDMPVAPY PLGSSSLGTL APSSSSSPDQ RTELHSSSSV  420
KPKTTTSGGS ETVAAGVSSS SSTTGGVSHS EPAEAKNGDS ASIEVKSSS
Cis-element ? help Back to Top
SourceLink
PlantRegMap676708078
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006287665.10.0zinc finger CCCH domain-containing protein 58 isoform X1
RefseqXP_023636660.10.0zinc finger CCCH domain-containing protein 58 isoform X1
SwissprotQ6NPN30.0C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLA0A1J3IQY40.0A0A1J3IQY4_NOCCA; Zinc finger CCCH domain-containing protein 58
STRINGXP_006287665.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17792786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.10.0C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]