PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676708170
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family NF-YB
Protein Properties Length: 175aa    MW: 19068.2 Da    PI: 7.5051
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676708170genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB176.32.9e-5528121194
      NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                vreqdrflPian+srimk+ lP n+ki+kdake+vqecvsefisf+tseasdkcqrekrktingddllwa+atlGfedy+eplkvyl++yre +
  676708170  28 VREQDRFLPIANISRIMKRGLPPNGKIAKDAKEIVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLTRYREGD 121
                69*****************************************************************************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.2E-5326144IPR009072Histone-fold
SuperFamilySSF471135.39E-4031145IPR009072Histone-fold
PfamPF008081.8E-273498IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.3E-216280No hitNo description
PROSITE patternPS0068506581IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006152.3E-218199No hitNo description
PRINTSPR006152.3E-21100118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MAESQAKSPG GCGSHESGGD QSPRSLHVRE QDRFLPIANI SRIMKRGLPP NGKIAKDAKE  60
IVQECVSEFI SFITSEASDK CQREKRKTIN GDDLLWAMAT LGFEDYIEPL KVYLTRYREG  120
DSKGSAKGGD ANAKKDGQSS QNGQFSQLAH QGSFSQGPYG NSQAQHMMVP MPGTD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B2e-4728119192Transcription factor HapC (Eurofung)
4g92_B2e-4728119192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676708170
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3530830.0AK353083.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-13-K14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006410886.11e-122nuclear transcription factor Y subunit B-8
SwissprotQ8VYK41e-116NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLE4MX361e-121E4MX36_EUTHA; mRNA, clone: RTFL01-13-K14
TrEMBLV4M7P81e-121V4M7P8_EUTSA; Uncharacterized protein
STRINGBostr.23794s0383.1.p1e-122(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14802794
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37060.31e-119nuclear factor Y, subunit B8
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]