PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676708342

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

bHLH

Protein Properties

Length: 202aa MW: 23238.1 Da PI: 6.7882

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676708342	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.3	2.3e-07	90	132	8	55
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +E++RR+ i+++ + L+e+ P++ K + a+ Le veYIksL+ 676708342 90 MEKKRRQLIRDKVDILQEMTPNC-----AKSDLAAKLESIVEYIKSLK 132 8*******************8.....799*************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	5.9E-10	80	142	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.02E-11	80	148	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.036	82	131	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.65E-7	87	135	No hit	No description
SMART	SM00353	2.8E-5	88	137	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.8E-5	90	131	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MEINNSNQGT HDQELYSLSE LISSLSSDDL NELNPLQEIF GAHSSSSSTL SFSEPKDFTK 60 NRDQSDNRYH CNKSNRTPKR QRSMEYRVLM EKKRRQLIRD KVDILQEMTP NCAKSDLAAK 120 LESIVEYIKS LKQQIDIMST SYTQPAGYMS PFYGAQAPCM SPYTSPWGYY VPGIPMMPHQ 180 NIPFNSQFHQ VHDMARPDQT QI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in somatic embryogenesis. Acts as positive regulator of somatic embryo formation (PubMed:23874927, PubMed:26973252). Acts as positive regulator of ECP63 by targeting its promoter and inducing its expression (PubMed:26973252). {ECO:0000269\|PubMed:23874927, ECO:0000269\|PubMed:26973252}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676708342

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013619093.1	1e-109	PREDICTED: transcription factor bHLH109 isoform X2
Swissprot	Q5XVH0	7e-65	BH109_ARATH; Transcription factor bHLH109
TrEMBL	A0A0D3ANW8	1e-108	A0A0D3ANW8_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6DJ67	1e-108	A0A3P6DJ67_BRAOL; Uncharacterized protein
STRING	Bo2g057720.1	1e-109	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15032	14	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68240.1	5e-57	bHLH family protein

Publications ? help Back to Top
Gliwicka M,Nowak K,Balazadeh S,Mueller-Roeber B,Gaj MD Extensive modulation of the transcription factor transcriptome during somatic embryogenesis in Arabidopsis thaliana. PLoS ONE, 2013. 8(7): p. e69261 [PMID:23874927] Nowak K,Gaj MD Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis. J. Plant Physiol., 2016. 193: p. 119-26 [PMID:26973252]