PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676708478
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ERF
Protein Properties Length: 153aa    MW: 16121.2 Da    PI: 8.4811
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676708478genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.26.2e-1687136155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                + y+G+r ++ +g+Wv+eIr+p++   ++r++lg++  +e+Aa+a++ a+++l+g
  676708478  87 PVYRGIR-CR-SGKWVSEIREPKK---TTRVWLGTYPVPEMAAAAYDVAALALKG 136
                68****9.55.6*********854...5***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.8E-987136IPR001471AP2/ERF domain
PROSITE profilePS5103219.41488144IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-2588146IPR001471AP2/ERF domain
SMARTSM003801.2E-2588150IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-1788146IPR016177DNA-binding domain
CDDcd000184.85E-1689146No hitNo description
PRINTSPR003678.5E-689100IPR001471AP2/ERF domain
PRINTSPR003678.5E-6126146IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MTDPNNPFIE PKATSQASSS SVTTIVSART CGDSLSGSAT CEKSCPLATL TTVTVSFAAA  60
TSTTSCNDND TIMATDAGPI SRRKKHPVYR GIRCRSGKWV SEIREPKKTT RVWLGTYPVP  120
EMAAAAYDVA ALALKGGDTV LNFPDSVGSY PIP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676708478
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894372e-51AC189437.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB069A23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018455023.14e-75PREDICTED: ethylene-responsive transcription factor ERF026-like
SwissprotQ9CAN98e-61ERF26_ARATH; Ethylene-responsive transcription factor ERF026
TrEMBLA0A078IJF13e-72A0A078IJF1_BRANA; BnaA09g10750D protein
TrEMBLA0A3P5XWN03e-72A0A3P5XWN0_BRACM; Uncharacterized protein
TrEMBLM4EFQ23e-72M4EFQ2_BRARP; Uncharacterized protein
STRINGBra027615.1-P5e-73(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19572777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12630.18e-31ERF family protein