PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676708852
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family FAR1
Protein Properties Length: 504aa    MW: 58817 Da    PI: 7.3015
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676708852genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR163.65.7e-20132214390
       FAR1   3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                Y++Y+ + GF+vrk+  kk+  ++++++  +vCskeg+r+e   k   ++ +++ tr+gCka+++  ++k+g++++ ++e +HnH+l+
  676708852 132 YKKYGGKHGFNVRKQLRKKK--KDKVVRICYVCSKEGFRKEPVVK---KSYSQPITRCGCKAHMTCYLQKTGRYKIVSFEPNHNHDLV 214
                9************9976665..5669***************9766...999**********************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.5E-17132214IPR004330FAR1 DNA binding domain
PfamPF105515.3E-36336430IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MSIQMIQSNG LTKMKRTTSR WTIQMNHPDG AVGWRYQMEK RTWPLIILRT ILKFILWVEP  60
FHSTPFILPN HNFPPEEEDN SINEDETSVF EEEDDIANKE VTPLETNKET EKNDELFIEI  120
EFSFDETAHT AYKKYGGKHG FNVRKQLRKK KKDKVVRICY VCSKEGFRKE PVVKKSYSQP  180
ITRCGCKAHM TCYLQKTGRY KIVSFEPNHN HDLVITPMKH LLKVNRTFSV AQKQHANDAE  240
MSGISAKATI EMMSREVGGR ANLGFMVKDY RNYIYRKRTA EMEKGDAGAV LEYFQKKKEN  300
DSSFFYSMQL DEDAMITNIF WADDRSISDY NLFGDVVCFD TTYKTNEYDR PFAPFVGVNH  360
HKQTVVFGSA LLYDETTESF NWIFETFLGA MSGKQPKTIL TDQCAAMANA IATMFPETIH  420
RLCVWHIYQN AAKKLSHSFH GGDQFAMDFG KCVYDHEEEE EWLSAWSKML KKHELTENKW  480
LKSLFEVKEK WAMVYGRHTF TADM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147152RKKKKD
2147153RKKKKDK
Cis-element ? help Back to Top
SourceLink
PlantRegMap676708852
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022552503.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLR0EZH30.0R0EZH3_9BRAS; Uncharacterized protein
STRINGXP_006281824.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11826253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-88FAR1-related sequence 5