PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676708970
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ERF
Protein Properties Length: 560aa    MW: 62171.3 Da    PI: 9.5285
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676708970genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.24.1e-18469520156
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                ++++GVr++  +g+WvAeIr+p   g +  r +lg+f t +eAa a+++a+k+++g+
  676708970 469 CHFRGVRQRT-WGKWVAEIREP---G-HgSRLWLGTFPTSYEAALAYDEAAKAMYGH 520
                689****999.**********8...4.36*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF041934.5E-181367IPR006603PQ-loop repeat
SMARTSM006792.2E-122657IPR006603PQ-loop repeat
PfamPF041933.9E-14276328IPR006603PQ-loop repeat
SMARTSM006796.4E-9289320IPR006603PQ-loop repeat
PfamPF008471.3E-13469520IPR001471AP2/ERF domain
CDDcd000183.32E-29469528No hitNo description
Gene3DG3DSA:3.30.730.103.9E-28470528IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-19470528IPR016177DNA-binding domain
PROSITE profilePS5103220.429470527IPR001471AP2/ERF domain
SMARTSM003801.4E-35470533IPR001471AP2/ERF domain
PRINTSPR003671.5E-8471482IPR001471AP2/ERF domain
PRINTSPR003671.5E-8493509IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MMFFHSSVRD GLSLSLGVIS VVSWGVAEIP QIMTNYTEKS TEGLSIAFLT TWMVGDIFNL  60
LGCLMEPATL PTQFYMALMY TVTTTVLYVQ SIYYGHIYPR LKSRRNQTVE AERISNISSD  120
AKIPSRWRNS CSDATPCGSQ TTPITMIPGS HRSSFTGREL FYTSARSLSS SHTPPAGSVL  180
AQRMARGQSE PTLEEPLLPE DATSPSLPPS TKSMLCVVSI FMFLGTFNLS SLLSESRTVA  240
LGESDRVFVV RAARKLLQVT SGNLTENNGG ENSKIGMLLG WAMAVIYLGG RLPQICLNMR  300
RGHVEGLNPL MFFFALVGNM TYVGRFCFSF TTSAVAKTQI LTRRSMKPQK LPKAWLPQHG  360
SLEQIQSFPH KWLVANRTRE YLSFFNFNTL VPKVRYSYDF NLSQVIFLQI VTQNVESGMH  420
LQRCQDNLAV SSCAFYSRYT RVYPIPAADP KGSRKGRMKG KGGPENRICH FRGVRQRTWG  480
KWVAEIREPG HGSRLWLGTF PTSYEAALAY DEAAKAMYGH LARLNLPDIS NGSSSTVATV  540
SGSVTTLSDE SEVCALEDTH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-17470527260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-17470527563ATERF1
3gcc_A2e-17470527563ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap676708970
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0806110.0AY080611.1 Arabidopsis thaliana unknown protein (At2g41050) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013747681.10.0uncharacterized protein LOC106450547
RefseqXP_013747850.10.0uncharacterized protein LOC106450682
TrEMBLA0A078IUJ30.0A0A078IUJ3_BRANA; BnaC04g52270D protein
STRINGBra004596.1-P0.0(Brassica rapa)
STRINGBo4g012920.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.11e-24ERF family protein