PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676709360
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family NF-YA
Protein Properties Length: 243aa    MW: 27232.5 Da    PI: 9.4496
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676709360genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA106.62e-33153209158
  CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                +ep++VNaKQy++Il+RRq+Rakle+++k+  ksrkpylheSRh hA+rRpRg+gGrF
  676709360 153 EEPVFVNAKQYHGILRRRQSRAKLESQNKV-VKSRKPYLHESRHLHAIRRPRGCGGRF 209
                69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005215.2E-38151212IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.642152212IPR001289Nuclear transcription factor Y subunit A
PfamPF020456.4E-28154209IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.5E-24155177IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860157177IPR018362CCAAT-binding factor, conserved site
PRINTSPR006163.5E-24186209IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MTHKWENSIF KFRVAGRGGT RGNPWTKSES ELLRAETSDL PVICYVQSET LLSVSTYNIE  60
KQEEKDSHSQ FQIQPPIPPG RDSESIATSL VYSEQLPHSM APGHYPHPDP YYRSIFAPPC  120
DAQAYPPRPY AGVHVQIMGL QQQAVPLPSD AVEEPVFVNA KQYHGILRRR QSRAKLESQN  180
KVVKSRKPYL HESRHLHAIR RPRGCGGRFL NAKKDDEHHE GSHKENSNLS SGKSAMAASG  240
GTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A6e-22152219168NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676709360
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024008366.11e-105nuclear transcription factor Y subunit A-7 isoform X2
SwissprotQ84JP11e-96NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBLA0A1J3FZH41e-106A0A1J3FZH4_NOCCA; Nuclear transcription factor Y subunit A-7
STRINGXP_006305656.11e-102(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41682756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.23e-90nuclear factor Y, subunit A7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]