PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676709362

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

HB-other

Protein Properties

Length: 135aa MW: 15915.9 Da PI: 9.795

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676709362	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.1	4.2e-20	19	77	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le++++++++ps +r++L +++ +++ rq+kvWFqNrR +ek+ 676709362 19 KYVRYTPEQVEALERVYAECPKPSSLRRQQLIRECpilcNIEPRQIKVWFQNRRCREKQ 77 5679*****************************************************97 PP
2	bZIP_1	22.2	3.1e-07	71	113	18	60
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 18 rrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 rr+R++ ++e ++L++ +L+a Nk L +e+++l+k+v+ l 676709362 71 RRCREKQRKESARLQTVNRKLSAMNKLLMEENDRLQKQVSHLV 113 9**************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.3E-20	3	74	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.451	14	78	IPR001356	Homeobox domain
SMART	SM00389	4.2E-16	16	82	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.71E-18	18	81	IPR009057	Homeodomain-like
CDD	cd00086	1.50E-14	19	79	No hit	No description
Pfam	PF00046	1.1E-17	19	77	IPR001356	Homeobox domain
CDD	cd14686	6.99E-4	71	110	No hit	No description
Gene3D	G3DSA:1.20.5.170	5.8E-4	75	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 135 aa Download sequence Send to blast
MGHSMDDRDS PDKGFDSGKY VRYTPEQVEA LERVYAECPK PSSLRRQQLI RECPILCNIE 60 PRQIKVWFQN RRCREKQRKE SARLQTVNRK LSAMNKLLME ENDRLQKQVS HLVYENGFMK 120 HRINTAPGTT TDNSX

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the determination of adaxial-abaxial polarity in ovule primordium. Specifies adaxial leaf fates. Binds to the DNA sequence 5'-GTAAT[GC]ATTAC-3'. {ECO:0000269\|PubMed:11395776, ECO:0000269\|PubMed:15598805, ECO:0000269\|PubMed:17900520, ECO:0000269\|PubMed:9747806}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676709362

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269\|PubMed:14999284, ECO:0000269\|PubMed:16033795, ECO:0000269\|PubMed:17237362}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353258	1e-159	AK353258.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-39-H09.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006306764.1	4e-88	homeobox-leucine zipper protein ATHB-9
Refseq	XP_010460847.1	4e-88	PREDICTED: homeobox-leucine zipper protein ATHB-9
Refseq	XP_018488876.1	3e-88	PREDICTED: homeobox-leucine zipper protein ATHB-9
Refseq	XP_018488887.1	3e-88	PREDICTED: homeobox-leucine zipper protein ATHB-9
Refseq	XP_019094482.1	2e-89	PREDICTED: homeobox-leucine zipper protein ATHB-9-like, partial
Refseq	XP_019099288.1	3e-88	PREDICTED: homeobox-leucine zipper protein ATHB-9-like
Swissprot	O04292	4e-87	ATBH9_ARATH; Homeobox-leucine zipper protein ATHB-9
TrEMBL	A0A1J3CN22	7e-93	A0A1J3CN22_NOCCA; Homeobox-leucine zipper protein ATHB-9 (Fragment)
TrEMBL	A0A1J3I3G5	7e-93	A0A1J3I3G5_NOCCA; Homeobox-leucine zipper protein ATHB-9 (Fragment)
TrEMBL	A0A1J3IH42	7e-93	A0A1J3IH42_NOCCA; Homeobox-leucine zipper protein ATHB-9 (Fragment)
STRING	XP_010480757.1	5e-88	(Camelina sativa)
STRING	XP_010501662.1	1e-91	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18074	5	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30490.1	2e-89	HD-ZIP family protein

Publications ? help Back to Top
Jia X, et al. Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic. Plant Sci., 2015. 233: p. 11-21 [PMID:25711809] Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules. Development, 2016. 143(3): p. 422-6 [PMID:26700684] Wójcik AM,Nodine MD,Gaj MD miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis. Front Plant Sci, 2017. 8: p. 2024 [PMID:29321785]