PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676710040
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family GATA
Protein Properties Length: 209aa    MW: 22971.9 Da    PI: 8.2801
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676710040genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.12.8e-19166202135
       GATA   1 Cs..nCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C+  nC++++Tp+WRrgp g+ktLCnaCG+++rk+++
  676710040 166 CTnmNCNAISTPMWRRGPLGPKTLCNACGIKFRKEEE 202
                55559*****************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.9E-8162208IPR000679Zinc finger, GATA-type
PfamPF003201.6E-16166202IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.75E-11166205No hitNo description
Gene3DG3DSA:3.30.50.101.8E-13169204IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.42E-12170199No hitNo description
PROSITE profilePS5011412.031170209IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MENELDLTLR LGPLPSPTAV VETQLSLYTP TTVQGINVDG GRQDNNDGGE NHGRRRIFSV  60
DDGLIDDDEG ARNNIDVNIR YYNLVFNHFA GVGDTLSFAP YQLPQSPASA PATPTVSDYV  120
LIDVPPRRAH LNSLTIGNVL DANAFLKQRR GCGGCCGGRI EGVRKCTNMN CNAISTPMWR  180
RGPLGPKTLC NACGIKFRKE EERRSKRNR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676710040
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013632513.17e-90PREDICTED: GATA transcription factor 29
SwissprotQ9LT457e-51GAT29_ARATH; GATA transcription factor 29
TrEMBLA0A3N6RJ347e-78A0A3N6RJ34_BRACR; Uncharacterized protein
STRINGBostr.19424s0575.1.p3e-78(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM106522234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20750.13e-44GATA transcription factor 29
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]