PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676710050
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB
Protein Properties Length: 241aa    MW: 28058.2 Da    PI: 5.3969
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676710050genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.81.2e-18552148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEd++l+++++++G  +W++ +++ g+ R++k+c++rw +yl
        676710050  5 RGPWTPEEDQILINYIHLYGHSNWRALPKHAGLLRCGKSCRLRWINYL 52
                     89******************************99************97 PP
2Myb_DNA-binding51.72e-1658103148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T++E++ ++++++ lG++ W++Ia++++ gRt++++k+ w+++l
        676710050  58 RGNFTPQEEQTIINLHEVLGNR-WSAIAAKLP-GRTDNEIKNVWHTHL 103
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.29E-31199IPR009057Homeodomain-like
PROSITE profilePS5129425.063156IPR017930Myb domain
SMARTSM007171.7E-15454IPR001005SANT/Myb domain
PfamPF002492.1E-17552IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-25659IPR009057Homeodomain-like
CDDcd001679.00E-12752No hitNo description
SMARTSM007174.1E-1457105IPR001005SANT/Myb domain
PROSITE profilePS5129419.99757107IPR017930Myb domain
PfamPF002494.2E-1558103IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.2E-2760108IPR009057Homeodomain-like
CDDcd001671.40E-960103No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MGMKRGPWTP EEDQILINYI HLYGHSNWRA LPKHAGLLRC GKSCRLRWIN YLRPDIKRGN  60
FTPQEEQTII NLHEVLGNRW SAIAAKLPGR TDNEIKNVWH THLKKRLNKT QNSGGDTKDI  120
NGINETTHED KESVLVDTTS PQQFSNSITA FEISNNDKDD MMSYENISAL VDESFWSDVV  180
SVDNSNNNDE KKIEDWEGLL DRNSKRCSYN NPKLYNDDME FWFELFTSSR RIEAFSDIPE  240
F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-2831085109B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676710050
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195750.0AY519575.1 Arabidopsis thaliana MYB transcription factor (At2g31180) mRNA, complete cds.
GenBankBT0248530.0BT024853.1 Arabidopsis thaliana At2g31180 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_180676.11e-157myb domain protein 14
SwissprotQ9SJX81e-158MYB14_ARATH; Transcription factor MYB14
TrEMBLA0A0D3C3D01e-155A0A0D3C3D0_BRAOL; Uncharacterized protein
STRINGAT2G31180.11e-157(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.11e-152myb domain protein 14
Publications ? help Back to Top
  1. Chen Y, et al.
    AtMYB14 Regulates Cold Tolerance in Arabidopsis.
    Plant Mol. Biol. Rep., 2013. 31: p. 87-97
    [PMID:24415840]