PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676710984
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family WRKY
Protein Properties Length: 537aa    MW: 58439.8 Da    PI: 6.0838
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676710984genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.58.8e-31297355259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+
  676710984 297 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAgGCPVRKQVQRCAEDRSILITTYEGNHNHP 355
                7****************************9****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-33281357IPR003657WRKY domain
SuperFamilySSF1182907.32E-28289357IPR003657WRKY domain
PROSITE profilePS5081129.597291357IPR003657WRKY domain
SMARTSM007741.8E-36296356IPR003657WRKY domain
PfamPF031069.5E-27298355IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MFRFPVSLGG SRDEPHHDQI TPLDERRAVV GEVDFFSEKR DRVSRENINN DEDDEASKVH  60
IKMESPRVED NDRSRDVNIG LNLLTANTGS DESTVDDGLS MDMEDKRAKF ENAQLQEELK  120
NMKIENQRLR EMLSQATNNF NSLQMQLVAV MRQQEQRNSQ DHLLATESNR EGRKRQEVQT  180
MVPRQFMDLG PSSGAAEHDA EVSSEERTVL RSGSPPSLLE SSNPKGSGKR LLGREESPES  240
ESNAWGSPNK VPKHNQTSGN NSNNNGNGNL IDQSAAEATM RKARVSVRAR SEATMITDGC  300
QWRKYGQKMA KGNPCPRAYY RCTMAGGCPV RKQVQRCAED RSILITTYEG NHNHPLPPAA  360
MAMASTTTAA ASMLLSGSMS SQDGLMNPTN LLARAILPCS SSMATISASA PFPTITLDLT  420
NSSNGNNPNM TTTNPLMQFA QRPGFNPAAL PQVVSQALYY NQQQSKFSGL QLPAQPLQMA  480
TTSSMAESVS AASAAIASDP NFAAALAAAI TSIINGTSHQ NNNSNNSNLA TSNGDNI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-23283359176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00447DAPTransfer from AT4G22070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676710984
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC2465770.0KC246577.1 Brassica napus WRKY transcription factor 31.1 (WRKY31.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013734026.10.0probable WRKY transcription factor 31
SwissprotQ93WT00.0WRK31_ARATH; Probable WRKY transcription factor 31
TrEMBLA0A3P6FUH10.0A0A3P6FUH1_BRAOL; Uncharacterized protein
STRINGBo1g025900.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105728107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22070.10.0WRKY DNA-binding protein 31