PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676711390

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

MYB_related

Protein Properties

Length: 961aa MW: 98994.5 Da PI: 10.4867

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676711390	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	38.2	3.3e-12	196	240	1	44
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 r++W+teEde l+ avk++G g+W+tIa+ Rt+ q+ rw 676711390 196 RKKWSTEEDEELIAAVKRHGEGSWATIAKDEFeGERTASQLSQRW 240 789*************************98766789999998888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.174	191	248	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-14	192	243	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.1E-12	193	245	IPR009057	Homeodomain-like
SMART	SM00717	6.1E-10	195	246	IPR001005	SANT/Myb domain
Pfam	PF00249	2.7E-9	196	240	IPR001005	SANT/Myb domain
CDD	cd11660	1.16E-13	197	240	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009737	Biological Process	response to abscisic acid
GO:0009751	Biological Process	response to salicylic acid
GO:0009753	Biological Process	response to jasmonic acid
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 961 aa Download sequence Send to blast
MVDSSNSNKK RKEFISEADI ATLLQRYDTM TILKLLQEMA YYAEPKMDWN EMVKKTSTGI 60 TNAREYQLLW RHLAYKDSLL SMEESTQLLD DDSDMECELE TSPAVSVDAV AEAVAHVKVI 120 AASYVPSDSD IPEDSTFEAP LAINIPYGLP RGPQEPSDSY WSSRGMNITF PISLQKAAEG 180 HNGNGLASSM ASRKRRKKWS TEEDEELIAA VKRHGEGSWA TIAKDEFEGE RTASQLSQRW 240 GAIRRRCDTS NSSTQSGLQR TEAQMAANRA LSLAVGNRLP SKKAAVGTPL VRTSGSITGA 300 QANGGNSGSS MQGQQQSQPV VQTVPRPVVQ AVPRPATSVS TAKSRVSAKK TTANSTSRSE 360 LMVTANSVAA AACMSGLATT APVPKVEPGK TSVSALVPKA EPVINASPAA ASLPRPSAIS 420 STLNAEPVKN ASPSATSFPR PSAISSTPNA EPVKNASPSA TSFPRPSAIS STPNAEPVKN 480 ASPSATSFPR PSAISSTPNA EPVKNASPSA TSFPRPSAIS STPNAEPVKN ASPSATSFPP 540 ISSTPNAEPV KNASPSATSF PRPSAISSTP NAEPVKNASP SATSFPRPSV ISSTLNSEPV 600 KAPPSAASFP RPSGLSSAPN SAPVKAASAA SLPRSSGISS ALNAETAKAA TAASLPRPSG 660 ISSSLNPGPV KAASVASLPR PLGVISKAQP VKTPSAAFLP RPSGIISAPK ADPVKPASAV 720 SLPRRSGIIS TSKAEPVKTA PAAPSPRPAS VLLAPKAAEP VKSVAAAGPL NINSAVNGSP 780 INVIYSPSNK PSPMAPFSKG PTIQNNSVPS SFATSRLAPV QRVPAATVIS QKPNAGAAVT 840 TTKPVGVQKE QTQGSKAGPL ITTLQPNKTI STIPVISTGK PVATKVETPP SRMPKKDQVL 900 ETDVGSCTDK SSSSAKPPEK ESSTTVSSVV VAEAESKPKD EASKGKSLDV ATVTGTEKKG 960 L

Sequence ? help Back to Top

Protein Sequence Length: 961 aa Download sequence Send to blast

MVDSSNSNKK RKEFISEADI ATLLQRYDTM TILKLLQEMA YYAEPKMDWN EMVKKTSTGI  60
TNAREYQLLW RHLAYKDSLL SMEESTQLLD DDSDMECELE TSPAVSVDAV AEAVAHVKVI  120
AASYVPSDSD IPEDSTFEAP LAINIPYGLP RGPQEPSDSY WSSRGMNITF PISLQKAAEG  180
HNGNGLASSM ASRKRRKKWS TEEDEELIAA VKRHGEGSWA TIAKDEFEGE RTASQLSQRW  240
GAIRRRCDTS NSSTQSGLQR TEAQMAANRA LSLAVGNRLP SKKAAVGTPL VRTSGSITGA  300
QANGGNSGSS MQGQQQSQPV VQTVPRPVVQ AVPRPATSVS TAKSRVSAKK TTANSTSRSE  360
LMVTANSVAA AACMSGLATT APVPKVEPGK TSVSALVPKA EPVINASPAA ASLPRPSAIS  420
STLNAEPVKN ASPSATSFPR PSAISSTPNA EPVKNASPSA TSFPRPSAIS STPNAEPVKN  480
ASPSATSFPR PSAISSTPNA EPVKNASPSA TSFPRPSAIS STPNAEPVKN ASPSATSFPP  540
ISSTPNAEPV KNASPSATSF PRPSAISSTP NAEPVKNASP SATSFPRPSV ISSTLNSEPV  600
KAPPSAASFP RPSGLSSAPN SAPVKAASAA SLPRSSGISS ALNAETAKAA TAASLPRPSG  660
ISSSLNPGPV KAASVASLPR PLGVISKAQP VKTPSAAFLP RPSGIISAPK ADPVKPASAV  720
SLPRRSGIIS TSKAEPVKTA PAAPSPRPAS VLLAPKAAEP VKSVAAAGPL NINSAVNGSP  780
INVIYSPSNK PSPMAPFSKG PTIQNNSVPS SFATSRLAPV QRVPAATVIS QKPNAGAAVT  840
TTKPVGVQKE QTQGSKAGPL ITTLQPNKTI STIPVISTGK PVATKVETPP SRMPKKDQVL  900
ETDVGSCTDK SSSSAKPPEK ESSTTVSSVV VAEAESKPKD EASKGKSLDV ATVTGTEKKG  960
L

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676711390

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK117128	0.0	AK117128.1 Arabidopsis thaliana At1g58220 mRNA for putative MYB-family transcription factor, complete cds, clone: RAFL16-66-J10.
GenBank	AY519547	0.0	AY519547.1 Arabidopsis thaliana MYB transcription factor (At1g58220) mRNA, complete cds.
GenBank	BT005971	0.0	BT005971.1 Arabidopsis thaliana At1g58220 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006300610.1	0.0	nascent polypeptide-associated complex subunit alpha, muscle-specific form
TrEMBL	R0IAE0	0.0	R0IAE0_9BRAS; Uncharacterized protein
STRING	XP_006300610.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4823	27	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58220.1	0.0	MYB_related family protein