PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676711806
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family M-type_MADS
Protein Properties Length: 434aa    MW: 48894.4 Da    PI: 7.0083
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676711806genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF61.21.2e-191260250
               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
               +++++s + + + +R+ +i+KKA+EL +LC++e++vi ++++g+l +++
  676711806 12 SSSSYSLAATNLNNRLSTIFKKAQELTTLCGVEACVIQYGPDGELNTWP 60
               799*********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.00931062IPR002100Transcription factor, MADS-box
CDDcd002663.86E-142087No hitNo description
PROSITE profilePS500669.3212163IPR002100Transcription factor, MADS-box
PfamPF003192.1E-112359IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.58E-132395IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MRPPHNSSSS SSSSSYSLAA TNLNNRLSTI FKKAQELTTL CGVEACVIQY GPDGELNTWP  60
EERDKLRDLA LKYIKLDKAK RRKKSVDLYG FLNKMKEQNK MTNSAKKAKR NFEDLKYPIS  120
DHYTPHQISQ LIQSLERSYS ILQKRHFLES QNQAKTNFED HHQQSSNPTQ FTMNSALPQG  180
SGLKNNLLTQ ELCVYGQNNN SRHHSVPNTQ DYSELPAVQE SGIMKKEPYG CDQNMCLGNM  240
NINNFQHPYL SNTQGCSALP SELQASVSNY GLNQLMQMGN INNFTHPYVS NTQGCSALPS  300
ELQASVGNYG LNQLMQMGNF NHFTHPCVSN TQECSGLPSE LQASANNYGL NQLMQHERYS  360
FDQNMSTIDI TKSNVLNSVS DDFTFNFPDM PSSSLFNFDE NRPLQLHIPN DDSDISLITN  420
CQNQTGGKAI YLMK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676711806
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018479659.16e-87PREDICTED: agamous-like MADS-box protein AGL75, partial
SwissprotQ9FLL02e-67AGL75_ARATH; Agamous-like MADS-box protein AGL75
TrEMBLA0A078I5524e-81A0A078I552_BRANA; BnaA04g09910D protein
STRINGBra025607.1-P1e-80(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41200.11e-69AGAMOUS-like 75
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]