PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676711826
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family M-type_MADS
Protein Properties Length: 317aa    MW: 36514.1 Da    PI: 8.069
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676711826genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.71.3e-171462250
               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
               +++++s + +++ +R+ +i+ K +EL +LC++e++vi ++++g+l +++
  676711826 14 SSSSYSLAATSLNNRLSTIFNKVQELTTLCGVEACVIHYGPDGELNTWP 62
               799*********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF003196.8E-102361IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.05E-112497IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MRPPRSPSCS NSSSSSSYSL AATSLNNRLS TIFNKVQELT TLCGVEACVI HYGPDGELNT  60
WPEERDKVRD LGLKYIKLDK AKRRKKSVDL YGFLNKMEEQ NKMTNSLKKA KRIFEDLKYP  120
ISDHYTPHQI NQLIQSLERS YSILQRRCFL ESQEQANTNF EDHHQQHQCL QIQSLNPTKY  180
SALPQESGLK NHLLTIQRQQ LSTSLRLKHK NFSVLPSELQ ASVNNYGLNQ LMQVGNINNF  240
THPCVSNTQD CSALLSELMQ HELYDFDQNM RTSVITNINV LNRVSYDFSF DFPDMSSSFL  300
YNSDENRLLQ PSTLPSF
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676711826
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018479659.12e-84PREDICTED: agamous-like MADS-box protein AGL75, partial
SwissprotQ9FLL03e-54AGL75_ARATH; Agamous-like MADS-box protein AGL75
TrEMBLA0A078I5529e-83A0A078I552_BRANA; BnaA04g09910D protein
STRINGBra025607.1-P3e-81(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41200.12e-56AGAMOUS-like 75
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]