PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676711844
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family GeBP
Protein Properties Length: 201aa    MW: 23367.4 Da    PI: 9.4425
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676711844genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57349.41.3e-151623497
     DUF573 34 idafyefvkksisfkvsk.sqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97
               +d+fye vk+si f+ ++ + lv+Kir L+kK+ +k+kk   g  psf k+ d+++fels++iWg
  676711844  1 MDRFYESVKDSITFEGKNlNRLVNKIRTLRKKYMTKRKK---GVAPSFLKSLDKQCFELSESIWG 62
               799***********9765489****************99...**********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.6E-13162IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MDRFYESVKD SITFEGKNLN RLVNKIRTLR KKYMTKRKKG VAPSFLKSLD KQCFELSESI  60
WGFEVESKMK KVKLESPEPE GEIVETYWIM NSFVGESISS FGMEDEDVKQ KWSLLPAETQ  120
RKVYVKWKVL EEKSAEVVIQ KIGLPLRQTS ISAEILVMYH TLMATFFQIT GFVVYSSNIT  180
LSYIQHPRIM LCMGYVLMSS I
Cis-element ? help Back to Top
SourceLink
PlantRegMap676711844
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66420.12e-17DNA-binding storekeeper protein-related transcriptional regulator