PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676712578
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family GRAS
Protein Properties Length: 612aa    MW: 68839.6 Da    PI: 4.6866
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676712578genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS434.39.2e-1332436123374
       GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102
                + L++cA+a+++g+ e+a +++++l++++s +gdp qR+aay++e+Laar+a s++ ly+al+++e +   s+e+laa+++++ev+P++kf++l+aN aI
  676712578 243 QILISCARALAEGKSEEALSMVNELRQIVSIQGDPSQRIAAYMVEGLAARMAASGKFLYRALKCKEPP---SDERLAAMQVLFEVCPCFKFGFLAANGAI 339
                78*****************************************************************9...9**************************** PP

       GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200
                +ea+ gee+vHiiDfdi+qG Q+++L+++ a+ p++ p+lR+Tg+++pes+  s   l+ +g rL+++Ae  gv+f+f++ v ++++ +++++L +k gE
  676712578 340 VEAIRGEEEVHIIDFDINQGNQYMTLIKTVAELPGKRPRLRLTGIDDPESVqrSVGGLRIIGLRLEQLAEDHGVSFKFKA-VPSKTSIVSPSTLGCKAGE 438
                *************************************************9989999************************.7****************** PP

       GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac 300
                +l+Vn+++qlh+++desv++ + rde+L++vksl+Pk+v+vveq++++n+++F+ rfle+ eyysa+fdsl+++lpres+er++vEr++l+r+ivn+vac
  676712578 439 TLIVNFAFQLHHMPDESVTTVNLRDELLHMVKSLNPKLVTVVEQDVNTNTSPFFPRFLESYEYYSAVFDSLDMTLPRESQERMNVERQCLARDIVNIVAC 538
                **************************************************************************************************** PP

       GRAS 301 egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                eg+er+er e ++kWr+r+++aGF+p p+s++++++++ l+++ +   y+++ee g+l ++W++++L+++SaWr
  676712578 539 EGEERIERYEVAGKWRARMMMAGFNPRPMSSRVTSNIQNLIKQQYCSNYKLKEEMGELHFYWEEKSLIVASAWR 612
                *********************************************777*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.977215592IPR005202Transcription factor GRAS
PfamPF035143.2E-130243612IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MIHQWLDDFA VCDILLVLEQ TVAREHIQAR VMSLVRSAEP SAAAYRNPKL YSLNENGYNS  60
GGTSVEIFDP DRSKNTCLTD DSYPSQSYEK YFLDSPTDEF AQQHPVGSGA SVSSFGSLES  120
FPYQARPVLG CSMEYQLPFD STSTSSTRLF GGYQAATQSP SMDVVEEFDD EQMRSKIQEL  180
ERALLDDEDD KMVGLDQLME IDNEWSYPNE SQQHRDSPKE SSSADSNSHA SSKEVVSQTT  240
PKQILISCAR ALAEGKSEEA LSMVNELRQI VSIQGDPSQR IAAYMVEGLA ARMAASGKFL  300
YRALKCKEPP SDERLAAMQV LFEVCPCFKF GFLAANGAIV EAIRGEEEVH IIDFDINQGN  360
QYMTLIKTVA ELPGKRPRLR LTGIDDPESV QRSVGGLRII GLRLEQLAED HGVSFKFKAV  420
PSKTSIVSPS TLGCKAGETL IVNFAFQLHH MPDESVTTVN LRDELLHMVK SLNPKLVTVV  480
EQDVNTNTSP FFPRFLESYE YYSAVFDSLD MTLPRESQER MNVERQCLAR DIVNIVACEG  540
EERIERYEVA GKWRARMMMA GFNPRPMSSR VTSNIQNLIK QQYCSNYKLK EEMGELHFYW  600
EEKSLIVASA WR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-5424861126378Protein SCARECROW
5b3h_A4e-5424861125377Protein SCARECROW
5b3h_D4e-5424861125377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676712578
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3525710.0AK352571.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-01-F16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006416300.10.0scarecrow-like protein 1
RefseqXP_024008197.10.0scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLV4L4H20.0V4L4H2_EUTSA; Uncharacterized protein
STRINGXP_006416300.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69532744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]