PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676712688

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

WOX

Protein Properties

Length: 146aa MW: 16520.2 Da PI: 7.7253

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676712688	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.2	3.8e-20	24	84	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t++ql++Le+ +e+ + +p +++++e++++l ++te++V++WFqNrRa+ k+ 676712688 24 RNRWTPTSTQLQILESIYEErSGTPHRRRIREITAELsehgQITETNVYNWFQNRRARSKR 84 89***************98************************************97 PP
2	Wus_type_Homeobox	97.4	1.2e-31	23	86	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtPt++Q++iLe++y++ tP +++i++itaeL+e+G+i+++NV++WFQNr+aR+++kq 676712688 23 SRNRWTPTSTQLQILESIYEERSGTPHRRRIREITAELSEHGQITETNVYNWFQNRRARSKRKQ 86 689***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.7E-16	17	88	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.13E-18	20	90	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.236	20	85	IPR001356	Homeobox domain
SMART	SM00389	1.9E-12	22	89	IPR001356	Homeobox domain
CDD	cd00086	4.58E-13	24	86	No hit	No description
Pfam	PF00046	7.0E-18	24	84	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 146 aa Download sequence Send to blast
MNTNGGGYFD PMVASSSAHR ISSRNRWTPT STQLQILESI YEERSGTPHR RRIREITAEL 60 SEHGQITETN VYNWFQNRRA RSKRKQPQMT TTTTGPAEDL AVARACGDSG GFESYEHILF 120 PSPDLGIEHL LSRGEISAEF NSYRLT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	77	85	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676712688

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189247	9e-91	AC189247.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB018K09, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009149550.1	2e-84	PREDICTED: WUSCHEL-related homeobox 14-like
Swissprot	Q9LM84	2e-74	WOX14_ARATH; WUSCHEL-related homeobox 14
TrEMBL	A0A397YXH0	5e-83	A0A397YXH0_BRACM; Uncharacterized protein
TrEMBL	M4EAN0	5e-83	M4EAN0_BRARP; Uncharacterized protein
STRING	Bra025839.1-P	8e-84	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12211	17	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20700.1	9e-77	WUSCHEL related homeobox 14

Publications ? help Back to Top
Denis E, et al. WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis. Plant J., 2017. 90(3): p. 560-572 [PMID:28218997]