PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676712690

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

WOX

Protein Properties

Length: 201aa MW: 22521.2 Da PI: 6.6341

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676712690	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.5	5.5e-19	82	142	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ +e+ + +p+ +++e++++l ++ e++V++WFqNrRa+ k+ 676712690 82 RHRWTPTSMQLQILESIYEEgSGTPNPGRIKEITMELsqhgQIIEKNVYNWFQNRRARSKR 142 89***************99************************************97 PP
2	Wus_type_Homeobox	101.4	6.4e-33	81	144	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtPt+ Q++iLe++y++G tPn +i++it+eL+++G+i +kNV++WFQNr+aR+++kq 676712690 81 NRHRWTPTSMQLQILESIYEEGSGTPNPGRIKEITMELSQHGQIIEKNVYNWFQNRRARSKRKQ 144 689***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.9E-15	76	147	IPR009057	Homeodomain-like
PROSITE profile	PS50071	13.394	78	143	IPR001356	Homeobox domain
SuperFamily	SSF46689	8.13E-16	79	147	IPR009057	Homeodomain-like
SMART	SM00389	2.4E-12	80	147	IPR001356	Homeobox domain
Pfam	PF00046	9.3E-17	82	142	IPR001356	Homeobox domain
CDD	cd00086	3.51E-11	82	144	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001944	Biological Process	vasculature development
GO:0010072	Biological Process	primary shoot apical meristem specification
GO:0051301	Biological Process	cell division
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MERESQNVTY DGRVMTEEQM EVLRKQIAIY AAISGQLVFL HESLSTKLPL SSGNTVGMNP 60 TGGGYFDPMV ASSSAHHKIS NRHRWTPTSM QLQILESIYE EGSGTPNPGR IKEITMELSQ 120 HGQIIEKNVY NWFQNRRARS KRKQPQATIT RTTVQAVDAA LTTEERSCRD SGGFESYDHI 180 LFSSPDLGIE HLLDGGKFSE S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	135	143	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676712690

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018466782.1	1e-97	PREDICTED: putative WUSCHEL-related homeobox 10, partial
Swissprot	Q9LM84	1e-95	WOX14_ARATH; WUSCHEL-related homeobox 14
TrEMBL	A0A078GZH2	1e-96	A0A078GZH2_BRANA; BnaC07g15200D protein
TrEMBL	A0A3P6EUG7	1e-96	A0A3P6EUG7_BRAOL; Uncharacterized protein
STRING	XP_010459763.1	1e-95	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12211	17	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20700.1	4e-98	WUSCHEL related homeobox 14

Publications ? help Back to Top
Denis E, et al. WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis. Plant J., 2017. 90(3): p. 560-572 [PMID:28218997]