PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676712750
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family SBP
Protein Properties Length: 1033aa    MW: 114049 Da    PI: 8.3702
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676712750genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.51.2e-40132209178
                --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
        SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                +Cqv++C++dls+ak+yhrrhkvCevhska+++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+++
  676712750 132 VCQVDNCTQDLSHAKDYHRRHKVCEVHSKATKALVGKQMQRFCQQCSRFHLLSEFDEGKRSCRRRLAGHNRRRRKTTQ 209
                6**************************************************************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.1E-33126194IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.069130207IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.97E-37131208IPR004333Transcription factor, SBP-box
PfamPF031101.1E-28133206IPR004333Transcription factor, SBP-box
CDDcd002041.88E-7785922No hitNo description
Gene3DG3DSA:1.25.40.201.4E-6827932IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484033.42E-7828930IPR020683Ankyrin repeat-containing domain
PROSITE profilePS502978.561869941IPR020683Ankyrin repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1033 aa     Download sequence    Send to blast
MDEVGAQVAA PMFIHQSLSP MGRKRNLYHH QTPNRLVPSS QPQRRDEWNS KMWDWDSRRF  60
QAKPVDADVL RIGSEVQFDS TSRDKEGEER GLDLNLGCCL NVVEEETTMQ VGRPSKKVRS  120
GSPGGGGGYY PVCQVDNCTQ DLSHAKDYHR RHKVCEVHSK ATKALVGKQM QRFCQQCSRF  180
HLLSEFDEGK RSCRRRLAGH NRRRRKTTQP EEIASGVAAP GNRENTSNAN MDLMALLTAL  240
ACAQGKTEVK PVGSPAVPER EQLLQILNKI NSLPLPMDLV SKLNNIGSLA RKNLDHPVVN  300
PQNDMNGASP STMDLLAVLS ATLGSSSPDA LAILSQGGFG TKDSEKAKLS SYDQAATTNL  360
EKRTVGGERS SSSNQSPSQD SDSHAQDTRS SLSLQLFTSS PEDESRPAVA SSRKYYSSAS  420
SNPVEERSPS SSPVMQELFP LQTSPETMRS RNHQNTSPAR TGGCLPLELF GASNRGTANP  480
NFKGFGQQSG YASSGSDYSP PSLNSDSQDR TGKIVFKLLD KDPSQLPGTL RSEIYNWLSN  540
IPSEMESYIR PGCVVLSVYV AMSPAAWEQE RPVLFFFSSS KTCCNGLVLC YKILIQIFGE  600
TRGRIRCSKS WRTWNSPELI SVSPVAVVAG EETSLVVRGR SLTNDGISLR CTHMGGYESI  660
EVTGAACRRA IFDELNVNSF KVKNPQPGFL GRCFIEVENG FRGDSFPLII ANASICKELN  720
RIEEEFHPKS QDITEEQTQT SVRRPTSREE SLCFLNELGW LFQKNQTTEP RELSNFSLSR  780
FKFLLVCSVE RDYCALTRTL LGMLVERNLV NDELNREALD MLAESQLLNR AVKRKSKNMV  840
ELLVHYSVKP TALGSTKKLL FLPNITGPGG ITPLHLAACT SGSDDMVDLL TNDPQEIGLS  900
SWNSLCDAAG QTPYSYAAIR NNHTYNSLVA RKLADKRNRQ VSLNIESEIV DQLGVSRRLS  960
SEMNKSSCAT CATVALKYRR KASGSHRLFP TPIIHSMLAV ATVCVCVCVF MHAFPIVRQG  1020
SHFSWGGLDY GSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-31121206184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269|PubMed:15703061}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00155DAPTransfer from AT1G20980Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676712750
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3535540.0AK353554.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-52-I08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006416342.10.0squamosa promoter-binding-like protein 14
SwissprotQ8RY950.0SPL14_ARATH; Squamosa promoter-binding-like protein 14
TrEMBLV4KAJ10.0V4KAJ1_EUTSA; Uncharacterized protein
STRINGXP_006416342.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39992554
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20980.10.0squamosa promoter binding protein-like 14
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Liu J, et al.
    Characterizing Variation of Branch Angle and Genome-Wide Association Mapping in Rapeseed (Brassica napus L.).
    Front Plant Sci, 2016. 7: p. 21
    [PMID:26870051]