PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676712918
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ERF
Protein Properties Length: 135aa    MW: 14772 Da    PI: 7.5131
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676712918genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.62.3e-211565255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               +y+GVr+++ +g+++AeIrd +++g   r++lg+f+taeeAa+a+++a+ +++g
  676712918 15 KYRGVRRRP-WGKYAAEIRDSRKRG--ERVWLGTFDTAEEAARAYDQAAYSMRG 65
               8********.**********65554..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.1E-321575IPR001471AP2/ERF domain
PfamPF008471.0E-151565IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-241575IPR016177DNA-binding domain
CDDcd000186.89E-261574No hitNo description
SMARTSM003801.7E-351579IPR001471AP2/ERF domain
PROSITE profilePS5103224.211573IPR001471AP2/ERF domain
PRINTSPR003674.8E-121627IPR001471AP2/ERF domain
PRINTSPR003674.8E-123955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0010186Biological Processpositive regulation of cellular defense response
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0090332Biological Processstomatal closure
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MEQGGRGGGG GEQGKYRGVR RRPWGKYAAE IRDSRKRGER VWLGTFDTAE EAARAYDQAA  60
YSMRGQAAIL NFPHEYNMGS GSSSAATMAG SSSTSSGSSS RQVFEFEYLD DSVLEELLED  120
EENPNKSNSN KGKKK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-5711351131Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1310GGRGGGGG
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00029PBMTransfer from AT5G43410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676712918
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013659387.12e-66ethylene-responsive transcription factor ERF096
SwissprotQ9LSX03e-57ERF96_ARATH; Ethylene-responsive transcription factor ERF096
TrEMBLA0A078IN685e-65A0A078IN68_BRANA; BnaC09g17590D protein
TrEMBLA0A3P6EFT95e-65A0A3P6EFT9_BRAOL; Uncharacterized protein
STRINGBo9g059180.13e-62(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43410.15e-27ERF family protein
Publications ? help Back to Top
  1. Zander M,Thurow C,Gatz C
    TGA Transcription Factors Activate the Salicylic Acid-Suppressible Branch of the Ethylene-Induced Defense Program by Regulating ORA59 Expression.
    Plant Physiol., 2014. 165(4): p. 1671-1683
    [PMID:24989234]