PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676713058
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family FAR1
Protein Properties Length: 777aa    MW: 89662.9 Da    PI: 5.8256
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676713058genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1851.2e-2635143190
       FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...................tekerrtraetrtgCkaklkvkkekdgkwevtkl 81 
                +fY+eYAk+vGF++ +++s++s+++g++++++fvC+++g+ ++++k+                   +++ r +r++++t+Cka+l+vk ++dg+w++ +l
  676713058  35 EFYKEYAKSVGFNTIIKASRRSRMTGKFIDAKFVCTRYGNGSKKTKEgegiddtglgtdglnipqaRRRGRINRSSSKTDCKACLHVKIRQDGRWVIRTL 134
                6******************************************9999****************988888888**************************** PP

       FAR1  82 eleHnHela 90 
                 +eHnHe +
  676713058 135 IKEHNHETF 143
                ******976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.6E-2435143IPR004330FAR1 DNA binding domain
PfamPF105516.8E-21232323IPR018289MULE transposase domain
PROSITE profilePS5096610.027515551IPR007527Zinc finger, SWIM-type
SMARTSM005756.9E-6526553IPR006564Zinc finger, PMZ-type
PfamPF044341.3E-5528549IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 777 aa     Download sequence    Send to blast
MEIDLEMPSG ECDDQRINLG INEGIEFESK EEAFEFYKEY AKSVGFNTII KASRRSRMTG  60
KFIDAKFVCT RYGNGSKKTK EGEGIDDTGL GTDGLNIPQA RRRGRINRSS SKTDCKACLH  120
VKIRQDGRWV IRTLIKEHNH ETFPGQATSI RESVGREKLE KQSGAIVRDT KSRKPLALEG  180
EDLERLLNFF TDMQVENPFF FYSIDLSEEQ SVRNIFWVDA KGRLDYSCFC DVVSVDTTFI  240
KNEYKLPLVA FIGVNHHGQF LLLGSGLLLN DDSTSGFVWL FQAWLKAMHG CQPRVILTKH  300
DQMLKEAVSE ALPSSRHFFY MWDTLGQMPE KLGHVMRQEK GFMDEINEAI YGSCKSDEFE  360
KKWFEVVDRF HLRDNVWLHS LFEDREYWVP VYMKGVSLVG MCTAQRSESV NSVFDKYIQR  420
KSTLRAFLDQ YKTMMQEKYE EEEKAEIETL YKQPVLKSPS PFGKQMVEVY TREVFKKFQV  480
EVLGGVACHP KKESEEDGGN KGTFRVQDYE QNRAFVVVWS SESTEVVCSC RLFEFKGFLC  540
RHAMIVLQMS GELTIPSQYV LKRWTKYAKS REAVESDKIV DSTKAQRYTD LCLRSLKLSE  600
EASVSEENYN AVINVLNEAF GNCENTSNMI HNVEESDSDV AQDTSRHEEP NNNSFSENVA  660
DTVQEHPLHE VWKATALQEQ RNRYSILDDY ISAQQMSHEM GQINMMALSR VGYCTTHQNI  720
QSLGQSITEQ RIYGTEQLSF RPEVMYERLQ DMGQSSFRHH PQQHCDSSKD QQSNNSQ
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676713058
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3528390.0AK352839.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-08-D24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006413913.10.0protein FAR1-RELATED SEQUENCE 1
SwissprotQ5UBY20.0FRS1_ARATH; Protein FAR1-RELATED SEQUENCE 1
TrEMBLV4P7110.0V4P711_EUTSA; Uncharacterized protein
STRINGXP_006413913.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11826253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G19990.20.0FAR1-related sequence 1