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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | 676713120 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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| Family | LSD | ||||||||
| Protein Properties | Length: 189aa MW: 21023.1 Da PI: 5.6445 | ||||||||
| Description | LSD family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-LSD1 | 41.9 | 1.7e-13 | 121 | 145 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
C++C+ lL+YP+GApsVRC++C V
676713120 121 CSNCKLLLMYPYGAPSVRCSSCSSV 145
**********************876 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| TIGRFAMs | TIGR01053 | 1.3E-10 | 118 | 146 | IPR005735 | Zinc finger, LSD1-type |
| Pfam | PF06943 | 3.3E-11 | 121 | 145 | IPR005735 | Zinc finger, LSD1-type |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 189 aa Download sequence Send to blast |
MIAEVVMEEI QTQNKEEQKH HEQQVEEEEE EEGPPPGWES AVLPPPPIPT LPTAKRRKWC 60 VDLAGVYFRI QEEPNTSSAS AVRQLISFLK ELLKVIIFGM FLAAHIHYLS QISHQVGQVT 120 CSNCKLLLMY PYGAPSVRCS SCSSVTDIKV CNLSDSVLSS SCKKTTNDLR GLCSKDRSKL 180 SVLSGEETT |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | 676713120 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_010449027.1 | 1e-27 | PREDICTED: protein LOL2-like | ||||
| TrEMBL | A0A1J3JNJ9 | 3e-23 | A0A1J3JNJ9_NOCCA; Protein LOL2 (Fragment) | ||||
| STRING | XP_010449027.1 | 4e-27 | (Camelina sativa) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G21610.1 | 6e-20 | lsd one like 2 | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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