PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676713246
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 191aa    MW: 21503.3 Da    PI: 8.233
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676713246genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.11e-101663555
               HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                + +E++RR +++  ++eL +llP+    + + l+  + L +A +YIk+Lq
  676713246 16 RKTIEKNRRIQMKALYSELNSLLPQT---SRESLTLPDQLDEAANYIKKLQ 63
               678**********************9...8999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.881162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-91676IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.17E-91678IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00131768IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.8E-71763IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.62E-51967No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MDQSHSNTSQ TRSTDRKTIE KNRRIQMKAL YSELNSLLPQ TSRESLTLPD QLDEAANYIK  60
KLQVNVEKKR ERKRKLVAAT AGFDKLNSTG SSSMSSNVDV SVPRRLPKIE IQETGPILHI  120
FLVTSLEDKS LFHEITRVLT EELGAEITHA GYSIVDDAVF HTLHCKVEDY DYGAAGCRIS  180
ESLKKLVNNV N
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16675EKKRERKRKL
26875KRERKRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMap676713246
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009134156.11e-108PREDICTED: transcription factor bHLH36-like
RefseqXP_013669289.11e-108transcription factor bHLH162-like
SwissprotF4JIJ72e-90BH162_ARATH; Transcription factor bHLH162
TrEMBLA0A398ASR31e-107A0A398ASR3_BRACM; Uncharacterized protein
TrEMBLM4DAH61e-107M4DAH6_BRARP; Uncharacterized protein
STRINGBra013486.1-P1e-107(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12782592
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.13e-84bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]