PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676713258
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family Dof
Protein Properties Length: 242aa    MW: 27109 Da    PI: 8.9635
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676713258genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof114.25.7e-362177561
     zf-Dof  5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                + cprCds+ntkfCyynnys++qPry Ck+CrryWt+GGalrn+P+Gg+ rk k++
  676713258 21 PRVCPRCDSDNTKFCYYNNYSMAQPRYNCKNCRRYWTHGGALRNIPIGGSGRKTKRA 77
               678**************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-241676IPR003851Zinc finger, Dof-type
PfamPF027011.5E-312276IPR003851Zinc finger, Dof-type
PROSITE profilePS5088427.7732276IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102460IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010154Biological Processfruit development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000032Biological Processregulation of secondary shoot formation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MASSNVYVRG NRQVNEEKPP PRVCPRCDSD NTKFCYYNNY SMAQPRYNCK NCRRYWTHGG  60
ALRNIPIGGS GRKTKRARVE QPSVSQVVSV EIQQVNHRQP LVHVQETNEF FGSFGGSSSA  120
VAVGNHFGSL PDIHGDMVLP IRSIPPMDRL DLSDGSFHQG YYNVGSSDLV ANPLINQSIG  180
EHVNNYNSYR VNQEDPNNRN QSFNNTMNMN HNASTSGSRG YPGTDHMIDN NNNNKVKNKC  240
VL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676713258
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1728785e-66AC172878.1 Brassica rapa subsp. oleifera cultivar Inbred line 'Chiifu' clone KBrH069E01, complete sequence.
GenBankAC2410205e-66AC241020.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB039B11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013647345.11e-135dof zinc finger protein DOF4.4-like
SwissprotQ9SUA92e-79DOF44_ARATH; Dof zinc finger protein DOF4.4
TrEMBLA0A398AKU61e-132A0A398AKU6_BRACM; Uncharacterized protein
TrEMBLM4DAI31e-132M4DAI3_BRARP; Uncharacterized protein
STRINGBra013493.1-P1e-133(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16021789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21050.12e-65Dof-type zinc finger domain-containing protein