PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676713264
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family Dof
Protein Properties Length: 249aa    MW: 27700.4 Da    PI: 6.7056
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676713264genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof103.99.5e-332276660
     zf-Dof  6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60
               + cprC+s+nt+fCyynnys++qPry Ck+Crr+Wt+GGalrn+PvGg+ r  k+
  676713264 22 RVCPRCNSNNTRFCYYNNYSVAQPRYNCKSCRRFWTHGGALRNIPVGGSGRIIKR 76
               57**********************************************9997665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074785.0E-202076IPR003851Zinc finger, Dof-type
PfamPF027016.1E-292276IPR003851Zinc finger, Dof-type
PROSITE profilePS5088426.4132276IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102460IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MENLNVLGNG DNQVNEELLP RRVCPRCNSN NTRFCYYNNY SVAQPRYNCK SCRRFWTHGG  60
ALRNIPVGGS GRIIKRKRDQ PSVSQVVSVE IQQVNHYQPL SNVQETNEFV GSFGGSSSSS  120
VVSVGNHFGS LPEFQGDMML PTQGFPPMDH SDFHGGSFQQ DYYDVGSNDL VGNPLTNQPI  180
GGSVVVNSGH NGYVNQEDQN KFNQRFYNNV MYMDHNAGTS GSGGFSGTDY MNKNNCVFKS  240
SYHMEEYGP
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676713264
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013647345.11e-106dof zinc finger protein DOF4.4-like
SwissprotQ9SUA94e-72DOF44_ARATH; Dof zinc finger protein DOF4.4
TrEMBLA0A398AKU61e-104A0A398AKU6_BRACM; Uncharacterized protein
TrEMBLM4DAI31e-104M4DAI3_BRARP; Uncharacterized protein
STRINGBra013493.1-P1e-104(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16021789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21050.13e-56Dof-type zinc finger domain-containing protein