PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676713604

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

HD-ZIP

Protein Properties

Length: 156aa MW: 17974.2 Da PI: 8.3306

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676713604	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.5	1.9e-17	9	64	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r k+ ++t+eq+++Le++F n+++ + + L++ lgL++rqV vWFqN+Ra+ k 676713604 9 RNKKKRLTQEQVRQLEKCFTLNNKLEPDLKLYLSNTLGLPQRQVAVWFQNKRARSK 64 567889************************************************99 PP
2	HD-ZIP_I/II	102	5.3e-33	10	102	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +kk+rl++eqv++LE++F+ ++kLep+ K l+++Lgl +rqvavWFqn+RAR kt+ lE +y L+++++a +++++Le++v+ L++elk+ 676713604 10 NKKKRLTQEQVRQLEKCFTLNNKLEPDLKLYLSNTLGLPQRQVAVWFQNKRARSKTQSLELQYCNLQSKLEAALSDKAKLEHQVKFLQDELKR 102 59***************************************************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.35E-17	4	67	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.4E-17	4	69	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.617	6	66	IPR001356	Homeobox domain
SMART	SM00389	3.5E-16	8	70	IPR001356	Homeobox domain
Pfam	PF00046	6.0E-15	9	64	IPR001356	Homeobox domain
CDD	cd00086	8.55E-14	9	67	No hit	No description
PROSITE pattern	PS00027	0	41	64	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009637	Biological Process	response to blue light
GO:0009646	Biological Process	response to absence of light
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence Send to blast
MENPQSQSRN KKKRLTQEQV RQLEKCFTLN NKLEPDLKLY LSNTLGLPQR QVAVWFQNKR 60 ARSKTQSLEL QYCNLQSKLE AALSDKAKLE HQVKFLQDEL KRSRNQLALF TNQDSPMDNS 120 NLGSCEEGHD DHVVVFDELY ACFVSNGHGS SSTSWV

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676713604

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018469586.1	1e-101	PREDICTED: homeobox-leucine zipper protein ATHB-52
Swissprot	Q9FN29	2e-98	ATB52_ARATH; Homeobox-leucine zipper protein ATHB-52
TrEMBL	A0A078JVD7	2e-99	A0A078JVD7_BRANA; BnaCnng64030D protein
TrEMBL	D7MTN0	2e-99	D7MTN0_ARALL; ATHB52
STRING	fgenesh2_kg.8__1293__AT5G53980.1	1e-100	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12107	26	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53980.1	1e-101	homeobox protein 52