PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676713678
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family BBR-BPC
Protein Properties Length: 582aa    MW: 66380.7 Da    PI: 8.8953
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676713678genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind348.91.2e-1063065821301
  GAGA_bind   1 mdddgsrernkgyyepa.aslkenlglqlmssiaerdaki....rernlalsekkaavaerd....maflqrdkalaernkalverdnkllalllvensl 91 
                mdddg+  rn+gyyepa a++k nlglqlmssi +r++k+    r+ nl ++++++++++ d    m++    ++++e       +++k++++l+v+++ 
  676713678 306 MDDDGF--RNWGYYEPAaATFKGNLGLQLMSSI-DRNTKPflpgRDPNL-MIGQNGSYHHPDppihMSY----NWINE-------QKDKFFNMLPVTTT- 389
                99**99..9*******999**************.9**************.************5555555....*****.......899*******9986. PP

  GAGA_bind  92 asalpvgvqvlsgtksidslqq.lse..pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesadersk 188
                    p++ +vl++t+s+ s+++ l++  +q+++++v+       e+++i++     ++kk+k +++ ++++k+kk +k+k++++   ++++++   +r+k
  676713678 390 ----PNYGNVLPETSSAPSMHMnLHHhhHQTDENPVKC------EQEEIVQ-----TNKKRKPNSKAGATTKAKKPRKPKEEND---NTTNTNV--SRVK 469
                ....9*************99995333235555555552......2223332.....2233333356778888888888888332...2233333..789* PP

  GAGA_bind 189 aekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdh 288
                  kks+dlv+ngv++D+s+lPvP+C+CtGa++qCY+WG+GGWqSaCCtt+iS++PLP+stkrrgaRi+grKmSqgafkk+LekLa++G++++np+DLk+h
  676713678 470 PAKKSVDLVINGVNMDISGLPVPICTCTGAPQQCYRWGCGGWQSACCTTNISMHPLPMSTKRRGARISGRKMSQGAFKKVLEKLASDGFNFGNPIDLKSH 569
                **************************************************************************************************** PP

  GAGA_bind 289 WAkHGtnkfvtir 301
                WA+HGtnkfvtir
  676713678 570 WARHGTNKFVTIR 582
                ************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012264.5E-168306582IPR010409GAGA-binding transcriptional activator
PfamPF062172.2E-98306582IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
MDLSRDVDEC IKETINHSLG IPISNDALEK KLNAAQESQR RLREQYMSLV PKLKEKDQVI  60
ELARSEATIN ANALKKFVEE NRKLSGECED LVKKCKNWEK ECFLYHQDRE ALMDFGNESD  120
ERARKAESRV RELEEEVRKM SDVMKRRVEF EEEFASLEEE YLVDSVLSSL VSKDESHETK  180
FGRIFLSEAN IQDQSCQKLL SRWDQLKPST RKAVSLVSMV KKIEKDKECL VLNLAKAEQE  240
VELVCEQNRV LVNENRKLLK QCSPVVQCSA ERSKSKKRKS PKMTSSPIKK RKTGMESCEG  300
QLIFEMDDDG FRNWGYYEPA AATFKGNLGL QLMSSIDRNT KPFLPGRDPN LMIGQNGSYH  360
HPDPPIHMSY NWINEQKDKF FNMLPVTTTP NYGNVLPETS SAPSMHMNLH HHHHQTDENP  420
VKCEQEEIVQ TNKKRKPNSK AGATTKAKKP RKPKEENDNT TNTNVSRVKP AKKSVDLVIN  480
GVNMDISGLP VPICTCTGAP QQCYRWGCGG WQSACCTTNI SMHPLPMSTK RRGARISGRK  540
MSQGAFKKVL EKLASDGFNF GNPIDLKSHW ARHGTNKFVT IR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1276291KRKSPKMTSSPIKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMap676713678
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3P5YW190.0A0A3P5YW19_BRACM; Uncharacterized protein
STRINGBra026196.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28932769
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.31e-169basic pentacysteine 2