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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
676713906 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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| Family |
GRAS |
| Protein Properties |
Length: 537aa MW: 59176.1 Da PI: 6.0333 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 676713906 | genome | VEGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 402.1 | 5.5e-123 | 156 | 526 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
l+e+L+e A+av++gd++ a ++ +++++s +g+p+qRl ay++e+L+arl++s+s++y+al+++e + e ++++ +++e++P+ kf++ +aN
676713906 156 LKEVLVEGARAVADGDFATACGFIDVMEQMVSVSGSPIQRLGAYMAEGLRARLQGSGSNIYRALKCNEPT---GRELMSYMGVLYEICPYWKFAYTAANA 252
5789*****************************************************************9...99999999******************* PP
GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
aIleav++e+++HiiDf+i qG Q++ L+q+La+Rp+gpp lR+Tgv++++s+ + l+ +ge+Lak+A+++gvpfef+ + + +++ e+L v+p
676713906 253 AILEAVATENKIHIIDFQIAQGSQYMFLIQELAKRPGGPPLLRVTGVDDSQSNyaRGGGLNLVGEKLAKMAQSCGVPFEFHD-AIMSGCKVHREHLGVEP 351
*************************************************999999999************************.788899999******** PP
GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298
g a++Vn+ + lh+++desvs+e++rd++L+l+kslsPk+v++veqe+++n+++Fl rfle+l+yy+a+f+s++a +r++++ri+ E+++++r+ivn++
676713906 352 GFAVVVNFPYVLHHMPDESVSVENHRDRLLHLIKSLSPKLVTLVEQESNTNTSPFLSRFLETLDYYTAMFESIDAARARDDKQRISAEQHCVARDIVNMI 451
***************************************************************************99*********************** PP
GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
ace++er+erhe l+kWr r+++aGF p+s++aa a+ +l+ ++++ y++ ++g+l+l Wk+rp+ ++SaW+
676713906 452 ACEETERVERHEVLGKWRVRMMMAGFMGWPVSTSAAFAASEMLKGYDKN-YKLGGNEGALYLFWKRRPMATCSAWK 526
***********************************************66.*************************8 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 537 aa
Download sequence Send
to blast |
MQTSQKHHSA AGLHMLYPQV YCSPQFQVID SKNGFSETPS KESFFTLESS IASGSLPSYD 60
SPSVSITSGR SPISPQGSQS CISDLHPSPE NVYGSPLSGA SSYVYDEAGV KNKIRELEVS 120
LLSGDPKVEE YSGFSPAAGK SWNWDELLAL TPQLDLKEVL VEGARAVADG DFATACGFID 180
VMEQMVSVSG SPIQRLGAYM AEGLRARLQG SGSNIYRALK CNEPTGRELM SYMGVLYEIC 240
PYWKFAYTAA NAAILEAVAT ENKIHIIDFQ IAQGSQYMFL IQELAKRPGG PPLLRVTGVD 300
DSQSNYARGG GLNLVGEKLA KMAQSCGVPF EFHDAIMSGC KVHREHLGVE PGFAVVVNFP 360
YVLHHMPDES VSVENHRDRL LHLIKSLSPK LVTLVEQESN TNTSPFLSRF LETLDYYTAM 420
FESIDAARAR DDKQRISAEQ HCVARDIVNM IACEETERVE RHEVLGKWRV RMMMAGFMGW 480
PVSTSAAFAA SEMLKGYDKN YKLGGNEGAL YLFWKRRPMA TCSAWKPNPN PNPNQIV
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK352818 | 0.0 | AK352818.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-05-N11. |
