PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676714226
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family SRS
Protein Properties Length: 183aa    MW: 20553.7 Da    PI: 5.6703
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676714226genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF70287.43.3e-2766113350
     DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrr 50 
                s t+sCqdCGnqakk+C+ +RCRtCCks+g+dC thv+stW+p+akr+
  676714226  66 SVTISCQDCGNQAKKGCTNMRCRTCCKSQGLDCPTHVRSTWIPIAKRQ 113
                6789******************************************97 PP
2DUF70282.21.3e-2511316899154
     DUF702  99 eletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                +++ +++Peevss+a+frcvr+s+ ddg+ ++aYqt+v i+GhvfkGiLy+qG+e+
  676714226 113 QMDETTFPEEVSSDALFRCVRMSGTDDGDSQYAYQTTVGIAGHVFKGILYNQGPES 168
                577889************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051423.9E-2368113IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016238.0E-2770112IPR006510Zinc finger, lateral root primordium type 1
PfamPF051422.9E-22116167IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016244.5E-29119166IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MDGDGIGSSR NNEEENQQKT NWLWYRNTIS SSTSHNNQQQ IWQQQQSLDL YPGQINVCDV  60
TTSPRSVTIS CQDCGNQAKK GCTNMRCRTC CKSQGLDCPT HVRSTWIPIA KRQMDETTFP  120
EEVSSDALFR CVRMSGTDDG DSQYAYQTTV GIAGHVFKGI LYNQGPESMS MPGTQFYENP  180
PRS
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676714226
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009102280.11e-101PREDICTED: protein SHI RELATED SEQUENCE 4 isoform X2
RefseqXP_018508512.11e-101PREDICTED: protein SHI RELATED SEQUENCE 4 isoform X2
SwissprotQ9SI194e-96SRS4_ARATH; Protein SHI RELATED SEQUENCE 4
TrEMBLA0A397YHC11e-104A0A397YHC1_BRACM; Uncharacterized protein
STRINGBra039917.1-P1e-100(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM151171519
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18120.17e-95SHI-related sequence 4