PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676714638

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

Dof

Protein Properties

Length: 206aa MW: 23196.9 Da PI: 9.1462

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676714638	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	127.2	4.9e-40	31	90	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++++lkcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGG+lrn+PvGgg+rkn k+ 676714638 31 EQEQLKCPRCDSPNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGSLRNIPVGGGSRKNSKR 90 57899****************************************************886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	4.0E-33	33	89	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.348	35	89	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	5.0E-22	36	80	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	37	73	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MQDLTSAAAY YQHTMMMTAK QQQQQQPELP EQEQLKCPRC DSPNTKFCYY NNYNLSQPRH 60 FCKNCRRYWT KGGSLRNIPV GGGSRKNSKR PSSSNVKNKT VAVSSDQRPS SVGEEPRSKE 120 EERRMITGQE MDPTRMLYGL PVGDPNGRFS SLLASNMQQM GGISYDTGSN WYPGMDLGLG 180 PGSGFRRTDD DASWTDLAMN RGVEKN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00199	DAP	Transfer from AT1G51700	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676714638

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB017564	2e-31	AB017564.1 Arabidopsis thaliana adof1 mRNA for dof zinc finger protein, complete cds.
GenBank	AC025294	2e-31	AC025294.14 Arabidopsis thaliana chromosome 1 BAC F19C24 genomic sequence, complete sequence.
GenBank	AK229106	2e-31	AK229106.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-39-C17.
GenBank	BT025772	2e-31	BT025772.1 Arabidopsis thaliana At1g51700 mRNA, complete cds.
GenBank	CP002684	2e-31	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_175581.1	2e-95	DOF zinc finger protein 1
Swissprot	O82155	1e-96	DOF17_ARATH; Dof zinc finger protein DOF1.7
TrEMBL	A0A384L6K9	4e-94	A0A384L6K9_ARATH; DOF1
TrEMBL	Q1ECG2	4e-94	Q1ECG2_ARATH; At1g51700
STRING	AT1G51700.1	6e-95	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1269	28	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	6e-77	DOF zinc finger protein 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]