PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676714660
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family GATA
Protein Properties Length: 261aa    MW: 28458.7 Da    PI: 7.3641
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676714660genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.62.3e-15225259133
       GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33 
                C++Cg  +  Tp++Rrgp+g++tLCnaCGl+++ k
  676714660 225 CRHCGIGEksTPMMRRGPEGPRTLCNACGLMWANK 259
                ****865556**********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.51378113IPR010399Tify domain
SMARTSM009797.6E-1178113IPR010399Tify domain
PfamPF062002.4E-1180112IPR010399Tify domain
PROSITE profilePS5101712.987149191IPR010402CCT domain
PfamPF062031.7E-15149191IPR010402CCT domain
SuperFamilySSF577169.98E-10218258No hitNo description
SMARTSM004011.1E-5219261IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.7E-13223259IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.09E-12224259No hitNo description
PROSITE patternPS003440225252IPR000679Zinc finger, GATA-type
PfamPF003202.8E-13225260IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MDDDLHGSNG RMHIGEAQDP MHVQYEHHAL QHIHNGSGMV DDHADVGNGG GMSEGVEPDI  60
PSHPGNITDN RGEVVDRGSE QGDQLTLSFQ GQVYVFDSVL PEKVQAVLLL LGGRELPQAP  120
PTGLGGASHQ NNRVLGLPGT PQRFSMPQRL ASLVRFREKR KGRNFDKKIR YTVRKEVALR  180
MQRNKGQFTS AKSNNDEAAS AGSSWGSNQT WAVEGSEAQN QEISCRHCGI GEKSTPMMRR  240
GPEGPRTLCN ACGLMWANKA S
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676714660
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1190610.0AB119061.1 Arabidopsis thaliana ZML2 mRNA for GATA-type zinc finger protein, complete cds.
GenBankAY1503950.0AY150395.1 Arabidopsis thaliana putative flowering protein CONSTANS (At1g51600) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010500738.10.0PREDICTED: GATA transcription factor 28
SwissprotQ8H1G01e-177GAT28_ARATH; GATA transcription factor 28
TrEMBLR0IMP11e-179R0IMP1_9BRAS; Uncharacterized protein
STRINGXP_010500738.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36842659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.21e-179ZIM-LIKE 2