PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676714760
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family RAV
Protein Properties Length: 769aa    MW: 86618.2 Da    PI: 8.3406
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676714760genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.35.7e-11458505154
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                ++ykGV +   +g W A+I+       ++r++lg+f +a eAa+a++ a  kl+
  676714760 458 TKYKGVVQQQ-NGNWGAQIYAE-----HRRIWLGTFKSAAEAAAAYDSASIKLR 505
                69****9888.8*********5.....5*********************99997 PP
2B387.31.3e-27592690187
                EEEE-..-HHHHTT-EE--HHH.HTT...............---.....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...............ggkke...esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                f k+ltpsdv+k++rlv+pkk+a +h                        +++++++d+  r+W+++++y+++s+++v+t+GW++Fvk+++Lke+D++vF
  676714760 592 FHKELTPSDVGKLNRLVIPKKHAVKHlpfisddqkerddgeT---GgavDDVEVVFYDRAMRQWKFRYCYWRSSQSFVFTRGWNGFVKEKDLKEKDTIVF 688
                89*****************************87776665552...1444899************************************************ PP

                EE-SS CS
         B3  83 kldgr 87 
                +   +
  676714760 689 Y---N 690
                9...3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047553.2E-4675254IPR006843Plastid lipid-associated protein/fibrillin conserved domain
CDDcd000182.06E-10458518No hitNo description
SuperFamilySSF541716.54E-13459517IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-15459516IPR001471AP2/ERF domain
SMARTSM003803.6E-15459522IPR001471AP2/ERF domain
PROSITE profilePS5103217.293459516IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.5E-30586690IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.58E-26590690IPR015300DNA-binding pseudobarrel domain
CDDcd100172.34E-23591689No hitNo description
PfamPF023621.1E-24592691IPR003340B3 DNA binding domain
PROSITE profilePS5086311.603592703IPR003340B3 DNA binding domain
SMARTSM010191.4E-20592706IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009535Cellular Componentchloroplast thylakoid membrane
GO:0009941Cellular Componentchloroplast envelope
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 769 aa     Download sequence    Send to blast
MVALRFFYNV EMSLPCISPS PSSPISVSSS SPRYHLLNTT NKRLDSSRNC RTLRITCSSS  60
STFTGGQTQQ SSFNEAEMKL IDALIGIQGR GKSASPKQLN DVESAVKVLE GLEGIPNPTE  120
SELIEGRWQL MFTTRPGTAS PIQRTFTGVD VFTVFQDVYL KTTNDPRVSN IVKFSDIIGE  180
LKVEAVASIK DAKKVLFRFD RAAFAIKFLP FKVPYPVPFR LLGDEAKGWL DTTYLSPSGN  240
LRISRGNKGT TFVLQKETVP RQKLLATISR DKGVAEAIDE FLASNTNSAE DDFELLDGNW  300
QMIWSSQMYT DSWLENAANG LMGRQHVFFS ESILIQIIDK EGRIKFEVNI IPAFRFSMKG  360
KFSKSGGSTY ELKMDDAAII GGPFGYPIEL TNSIELQVLY TFMLAAMDIL LHKTSNEDKT  420
TSETSGCSSD SVLRLAKRMK PTLSTTTTAI ALSNTATTKY KGVVQQQNGN WGAQIYAEHR  480
RIWLGTFKSA AEAAAAYDSA SIKLRSFDAN SHRNFPWTEI TTHEPEFQVN HTTEAVLNMI  540
KDGSYQHKFR DYLRRRSQMV AFANVNIVAS KQSRGGRGVE ESNNCFSCTQ LFHKELTPSD  600
VGKLNRLVIP KKHAVKHLPF ISDDQKERDD GETGGAVDDV EVVFYDRAMR QWKFRYCYWR  660
SSQSFVFTRG WNGFVKEKDL KEKDTIVFYN CDVPTSVKTL QGQSNNFLMI DVDYYTDKGF  720
VAPKEVDKMV DNSSEDEMKT QNFFITKFEE ETKSEVNKGG FMLFGVRIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A7e-2459168813100DNA-binding protein RAV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap676714760
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1185450.0AK118545.1 Arabidopsis thaliana At1g51110 mRNA for unknown protein, complete cds, clone: RAFL19-77-I08.
GenBankAY0876880.0AY087688.1 Arabidopsis thaliana clone 37689 mRNA, complete sequence.
GenBankBT0053470.0BT005347.1 Arabidopsis thaliana At1g51115 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009147783.10.0PREDICTED: probable plastid-lipid-associated protein 12, chloroplastic
SwissprotQ8LAP60.0PAP12_ARATH; Probable plastid-lipid-associated protein 12, chloroplastic
TrEMBLA0A0D3CPX50.0A0A0D3CPX5_BRAOL; Uncharacterized protein
STRINGBo6g024770.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-166RAV family protein
Publications ? help Back to Top
  1. Peltier JB,Ytterberg AJ,Sun Q,van Wijk KJ
    New functions of the thylakoid membrane proteome of Arabidopsis thaliana revealed by a simple, fast, and versatile fractionation strategy.
    J. Biol. Chem., 2004. 279(47): p. 49367-83
    [PMID:15322131]
  2. Zhang P, et al.
    MetaCyc and AraCyc. Metabolic pathway databases for plant research.
    Plant Physiol., 2005. 138(1): p. 27-37
    [PMID:15888675]
  3. Singh DK,McNellis TW
    Fibrillin protein function: the tip of the iceberg?
    Trends Plant Sci., 2011. 16(8): p. 432-41
    [PMID:21571574]
  4. Lundquist PK, et al.
    The functional network of the Arabidopsis plastoglobule proteome based on quantitative proteomics and genome-wide coexpression analysis.
    Plant Physiol., 2012. 158(3): p. 1172-92
    [PMID:22274653]