PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676714772

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

bHLH

Protein Properties

Length: 232aa MW: 26018.5 Da PI: 6.5402

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676714772	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.7	7.4e-12	74	120	4	53
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 ++ rE++RRdr+N++f eL ++l + +++K +K++i A++ +++ 676714772 74 SKACREKQRRDRLNDKFTELSTILEPG---RAPKTDKVAIISDAIRMVNQ 120 5678********************9...9************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.385	70	121	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.41E-8	73	126	No hit	No description
Pfam	PF00010	1.9E-9	74	120	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.7E-12	74	143	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.7E-12	75	143	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.7E-8	76	127	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MVSPENTNWL SDYPLIDGGA FSDHNPTFPW QIDQIDGSAS VSVEVDGFLC DSDVIKEPGS 60 RKRIKSESCG GSSSKACREK QRRDRLNDKF TELSTILEPG RAPKTDKVAI ISDAIRMVNQ 120 VRDEAQKLKD LNSSLQEKIK ELKDEKSELR DEKQKLKIEK ERIEQQLKAI KTQPLPQPCF 180 LPNQPTLSQA QAQAPGNKLV PFTTYPGFAM WQFMPPAAVD TSQDHVLRPP VA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676714772

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353406	0.0	AK353406.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-30-I24.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006393084.1	1e-153	transcription factor bHLH115
Swissprot	Q9C682	1e-148	BH115_ARATH; Transcription factor bHLH115
TrEMBL	E4MY09	1e-152	E4MY09_EUTHA; mRNA, clone: RTFL01-30-I24
TrEMBL	V4JXZ4	1e-152	V4JXZ4_EUTSA; Uncharacterized protein
STRING	XP_006393084.1	1e-153	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1437	28	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51070.1	1e-151	bHLH family protein

Publications ? help Back to Top
Liang G,Zhang H,Li X,Ai Q,Yu D bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(7): p. 1743-1755 [PMID:28369511]