PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676715074
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ERF
Protein Properties Length: 234aa    MW: 25892.6 Da    PI: 6.1105
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676715074genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-184090155
        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               ++ykGVr ++ +g+Wv+eIr p   ++++r++lg++ tae Aa+a++aa ++l+g
  676715074 40 KKYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTAEAAARAYDAALLCLKG 90
               59*****998.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.47E-184099No hitNo description
SuperFamilySSF541715.1E-204199IPR016177DNA-binding domain
PfamPF008471.5E-114190IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-304199IPR001471AP2/ERF domain
PROSITE profilePS5103221.9184198IPR001471AP2/ERF domain
SMARTSM003803.1E-3541104IPR001471AP2/ERF domain
PRINTSPR003675.5E-94253IPR001471AP2/ERF domain
PRINTSPR003675.5E-96480IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MVKQERKIQV TTSSSSSLSH SSSSSSSLTL HHQSCKNKIK KYKGVRMRSW GSWVSEIRAP  60
NQKTRIWLGS YSTAEAAARA YDAALLCLKG PKANLNFPHI NTTSPFLTDI DEKTLVSPKS  120
IQKIAAQAAN SISSDAFAPL SSSNDDGLHH YHDPSPSSSA ASSPPDDHHS DDDLVSLMES  180
FVDEHVSLMD LSWYDHNEMF FINGAFDYPP QLISSKTTVD DFYDDADIQL WSFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-1541991473Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00246DAPTransfer from AT1G77640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676715074
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893700.0AC189370.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB047M06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013720187.11e-105ethylene-responsive transcription factor ERF013-like
SwissprotQ9CAP46e-86ERF13_ARATH; Ethylene-responsive transcription factor ERF013
TrEMBLA0A397YZ431e-105A0A397YZ43_BRACM; Uncharacterized protein
STRINGBra015660.1-P1e-104(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29992767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77640.12e-83ERF family protein