PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676715432
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family B3
Protein Properties Length: 552aa    MW: 63145.6 Da    PI: 10.2796
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676715432genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3474.6e-1514101197
                EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                ffk l     ++++ l +p  f+++h  g  +   kt +l++  s ++W vk+  ++ +    +t+GWk+F+ a++L+ gD++vF+++g++ f  +v++f
  676715432  14 FFKPL--LPGFNTH-LNIPVAFFSKHvkG-RNDHIKTAKLRTdASAKTWLVKI--DGMK----FTDGWKDFAVAHDLRIGDIIVFRHEGEMMF--HVTAF 101
                66777..6677777.99**********63.3344467888775888*******..6665....9**********************9988777..77766 PP
2B373.62.4e-23182275599
                -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 +++++l+ +rl+lp +fa+++g++k ++k+++l +e+grsW+++l+y+k + + +++ GW++F+ +ng+k+g   +Fkl++ +++ +v++++r+
  676715432 182 KVSASSLRFDRLYLPMSFARSNGLDKMSGKEIILLNEEGRSWNLNLKYNKAGMHSFIRPGWRRFCAENGMKQGHHYTFKLVQ-KSGPPVIRLCRR 275
                45677778899*********************************************************************98.9999******98 PP
3B363.82.7e-20296386698
                ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                ++s++lk + l+l +kf++++g++k +s +++l++e+gr+W++ l++ +  g++ ++ GWk F++ ng+k+gD+++Fkl+g +++++v++++ 
  676715432 296 VTSYSLKIDKLYLRRKFVTANGLDKGCS-EIVLKNEWGRRWTFALKHYQLFGHTSIGPGWKTFCQVNGIKAGDSFMFKLVG-TGEKPVLSLCT 386
                689**********************998.****************888888889*************************99.77778988875 PP
4B347.43.4e-15458550598
                -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                +++  + k+  l+lp++f++ +g++k++  ++tl  ++g ++  v l  +k+ + + ++kGW+eF++a+++k g+ +v++l++++e+ +v+k++ 
  676715432 458 TLTRKAVKNYKLILPNSFTRGNGIDKPG--KITLLGKDGvKKQVVDLLQDKRTRVMRIGKGWREFCDAHDVKIGEPFVLELIWQEEAIPVLKFCT 550
                55666777888************99776..7********66666677668888889****************************99999999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.6E-228106IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-209111IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.74411104IPR003340B3 DNA binding domain
CDDcd100172.24E-1612101No hitNo description
SMARTSM010191.7E-2214104IPR003340B3 DNA binding domain
PfamPF023621.1E-92297IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.9E-21171273IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-19174277IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.636178276IPR003340B3 DNA binding domain
CDDcd100173.25E-17178274No hitNo description
SMARTSM010192.0E-29179276IPR003340B3 DNA binding domain
PfamPF023622.8E-22181275IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.4E-19287386IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.53E-16288386IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.563291387IPR003340B3 DNA binding domain
SMARTSM010191.3E-22292388IPR003340B3 DNA binding domain
PfamPF023628.6E-19296386IPR003340B3 DNA binding domain
CDDcd100171.24E-14298385No hitNo description
Gene3DG3DSA:2.40.330.103.5E-15446550IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.08E-14450550IPR015300DNA-binding pseudobarrel domain
CDDcd100173.73E-11453549No hitNo description
SMARTSM010195.1E-19454552IPR003340B3 DNA binding domain
PROSITE profilePS5086311.039454551IPR003340B3 DNA binding domain
PfamPF023622.5E-14455550IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MADQSLHSPI NPHFFKPLLP GFNTHLNIPV AFFSKHVKGR NDHIKTAKLR TDASAKTWLV  60
KIDGMKFTDG WKDFAVAHDL RIGDIIVFRH EGEMMFHVTA FGPSCCEVQY TSSSQEIHGD  120
DLTNYISKFL FYEMYSNSIE KDANVFILVT GSSSREKRKR VMKNPRKKVE SSSSDHSRFV  180
TKVSASSLRF DRLYLPMSFA RSNGLDKMSG KEIILLNEEG RSWNLNLKYN KAGMHSFIRP  240
GWRRFCAENG MKQGHHYTFK LVQKSGPPVI RLCRREHSKK LVPQSSLHHS CYAGSVTSYS  300
LKIDKLYLRR KFVTANGLDK GCSEIVLKNE WGRRWTFALK HYQLFGHTSI GPGWKTFCQV  360
NGIKAGDSFM FKLVGTGEKP VLSLCTSDRR KTSLECQEES NDSNTSSKDD SRKSQESEEE  420
SLCGKNISHE CFKIKKKNNF SRCRASSSYS QERFVRLTLT RKAVKNYKLI LPNSFTRGNG  480
IDKPGKITLL GKDGVKKQVV DLLQDKRTRV MRIGKGWREF CDAHDVKIGE PFVLELIWQE  540
EAIPVLKFCT KL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154167REKRKRVMKNPRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMap676715432
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013638637.10.0PREDICTED: B3 domain-containing protein REM17-like isoform X1
SwissprotQ84WP31e-166REM17_ARATH; B3 domain-containing protein REM17
TrEMBLA0A0D3CDE60.0A0A0D3CDE6_BRAOL; Uncharacterized protein
STRINGBo5g044960.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57811648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.11e-167B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]